FMO05723.5prime Sequence
1200 bp (1053 high quality bases) assembled on 2008-09-02
> FMO05723.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGCTCCAGCGG
CAGGTGCGGCGTCTGCCGTCCTGGACTTTGACGACATCCTGGTCGAGATC
GGAGAATTCGGACGCTTTCAGCGGCGGAACTATCTGCTCATATGCTTGCC
CGTACTTTTTGCTGCCGCCAATAGCCTGTCGTATGTTTTCACGGCAGGAT
CGCCGACCTATCGATGCTACGTGCCCGAGTGCGATAAGCTGGTTGATGCG
GAATATGGAGCGAATTGGGTGTCGATTGCCGTGCCCGGAAGCTGGAGCAA
GCGGGGCCATTTTACGCCGTCCACCTGCGAAAGGTTCGTGGCGAACGGTG
ACCATCTTGAGTCCTCATCGGATCCTTGGAGTGCGTGGCCTTTGGATCAG
TGCTTTGCTGAGAATTTCACGACGGAAACGGAGCGATGCAATCAGTTTGT
GTACGGCAGTTCGGAACGGACCATTGTGCAGCAGTGGGGACTACAATGCC
CCGAGAATCTCTGGAAGCTGGCATTCGTGGGCACTATACACTTTGCTGGT
CTGGTTGTGGGAACAGCTCTATCCGGCTACCTCGCCGATCGATATGGACG
CAAGCACATTTTCCTCTTCTGCATCGTGTTCATGGCGTTGACGGGAGTGG
CGCAGGCGCTGTCCTGGGACTACATAAGTTTCCTGTTCTTTGCCTTGCTG
AATGCAGTGGGCACTTCCGGTGTCTATCCGCTGGCTTTCATCATTGGGGT
GGAAATGGTCGGGCCGCGGAAACGCGAAATGTCCTCCATTGTGCTCAACT
ACTTCTATGCCGTGGGCGAGGCACTCCTGGGCCTGTCCGTTTTCCTGCCC
GACTGGCGGCAATTGCAACTGGCGCTCTCTGTACCGCCGCTCATCTGCGT
GGCCTACTTTTGGCTGGTACCGGAGTCCGTCCGGTGGCTGCTGCTCGTAC
CCGCGGAGCAAGCGGGAGTCATCATCCGGCGGGCCGCAAAGGTTACAGGC
GAGACATCTCGTCGAGCTGATGGCCAGCTTCAGCAACAGAGCCTGATGCA
AAACCGACAAGAGGATGATGTCGAGGTGCCTGACGTAAAAAGATGACAAG
ATCTGGTGCGTCAGAAGTGGCCGCCCTTCCATTTTGATGGCAAATACCCA
ATATTGCTGTCTGAATTTGGGCCGTCAATGCCAATCTCTCTATATGGAAA
FMO05723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RB | 2074 | CG4630-RB | 215..1382 | 35..1183 | 5130 | 97.1 | Plus |
| CG4630-RA | 2121 | CG4630-RA | 319..1486 | 35..1183 | 5130 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13217589..13218145 | 591..35 | 2785 | 100 | Minus |
| 2R | 25286936 | 2R | 13216985..13217479 | 1076..591 | 2005 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:29:19 has no hits.
FMO05723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:28 Download gff for
FMO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..1405 | 26..1107 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:24 Download gff for
FMO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..1405 | 26..1107 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:16 Download gff for
FMO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..1405 | 26..1107 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:16 Download gff for
FMO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13216949..13217478 | 592..1107 | 96 | <- | Minus |
| 2R | 13217589..13218150 | 26..591 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:28 Download gff for
FMO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9104454..9104983 | 592..1107 | 96 | <- | Minus |
| arm_2R | 9105094..9105655 | 26..591 | 99 | | Minus |
