FMO05724.5prime Sequence
1176 bp (1074 high quality bases) assembled on 2008-09-02
> FMO05724.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTACGCCAGACTG
CTGCGAAACTTCGGCGCAAACGCCAGGTGCTTTGCAACAGAAGCCAGCCC
AAAAGTTCGGCCTATCAGCAAGATCCTTATTTCAAATCGTGGTGAGATCG
CATGCAGGGTGATTCGAACCGCACGCAAGCTGGGAGTTCGTACCGTGGCC
GTGTTCTCGGATCCGGACGAGAAGAGCATGCACACGCAGTTGGCAGACGA
GTCGTACCGCGTGGGGGAAGCTGCCTCCTCGGCTTCCTATCTTCGCGGTG
AACGCATCCTGGACATAGCCAAGCGTTCGGGCGCCCAGGCCATCCACCCA
GGCTACGGCTTCCTCTCCGAGTCCGTCGAGTTTGCCGAGTTGTGCCAGCG
TGAGGGCATCATCTTCATGGGTCCGCCCAGTTCCGCCATCCGGGACATGG
GGATTAAGAGCACCAGCAAGGCCATAATGGCCGCTGCTGGGGTGCCGATC
ATCAATGGATACCATGGCGATGATCAGTCAGATGAGTGTTTGCAGCGAGA
AGCCGACAAAATTGGCTTTCCCTTGATGATTAAAGCCGTCCGCGGCGGCG
GAGGCAAAGGCATGAGAATCGCAGAAAAACCGGACGACTTCCTCACCGCT
CTGAACTCAGCTCGCACCGAGTCCGAGAAGTCGTTTGGCGACAGCTCTGT
GCTTCTGGAGCGGTACGTCCGATCTCCACGCCACGTAGAGGTTCAAGTAT
TTGCGGATCAGTATGGTGATGCTGTCTATCTGTGGGAAAGAGATTGCTCC
GTGCAAAGACGTCATCAAAAGATTATTGAAGAGGCGCCAGCTCCAGGTTT
GTCGGAAGATTTGCGTCGTGAGCTGGGCGAGGCTGCTGTTCGTGCAGCGA
AAGCTGTGGGCTACGTAGGAGCTGGCACCGTGTAGTTCATTCTAGACAAG
GAAGATCTCTCTTCCACTTCATGGAAATGAATACCCGCCTGCAGGTGGAG
CATCCTATAACGGAAATGATTACGGGCACCGATTTGGTGAATGCAGATTC
GCATGCCGCCGGTGAGCCATTACCCTGAGCATCTGAAATAACCGGGCGTG
CCACGCATTGGAGCTCGCATTAATGCAGAAATCTCTCCGGGAGGCTTTCT
CGCCCGGAACCGGAACCCTGCGATAT
FMO05724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..1438 | 36..1176 | 5275 | 97.9 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..1259 | 36..1176 | 5275 | 97.9 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..1169 | 46..1176 | 5225 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793473 | 842..74 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 31792309..31792650 | 1176..843 | 995 | 92.1 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 79..36 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:52 has no hits.
FMO05724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:31 Download gff for
FMO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1259 | 36..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:25 Download gff for
FMO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1259 | 36..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:46 Download gff for
FMO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1259 | 36..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:46 Download gff for
FMO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792309..31792650 | 843..1176 | 93 | <- | Minus |
| 3R | 31792705..31793470 | 77..842 | 100 | <- | Minus |
| 3R | 31793578..31793618 | 36..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:31 Download gff for
FMO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618031..27618372 | 843..1176 | 93 | <- | Minus |
| arm_3R | 27618427..27619192 | 77..842 | 100 | <- | Minus |
| arm_3R | 27619300..27619340 | 36..76 | 100 | | Minus |
