FMO05727.5prime Sequence
1272 bp (1069 high quality bases) assembled on 2008-09-02
> FMO05727.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCCGGCTAAGT
ATTATTTTATCGTTGCTCTGCGTATTCCCAGTCAATGGAGATTACTACTC
GGCTATAAGTGAGCTGGAAAGACTACTCGACGTGGAGGCTTTTATAGTAG
AAAAGTTCGATGAATATCTTGAAAGGGCTCAGCAAGAACAGGAGAACTTA
AAAAGATTTTTAGATCAGATAGACGAGCAGCAAAATGATCGTGGCGATCT
CGAGGAATACTTTGGAAATCCAATCAATGCCTTCATCACCATTAAACGCC
TCGTTCATGACTGGAAGTTCAATGTATTTGATCCTGTGTTTGACTCCAGT
AATTTTGAGACCTACAAGAACAACTTAAGTGATTCGCTCGAGAAGATCAA
CTTCAAAGGACCCACCCAAGAGGATCTACATGGAGCCACCCGCGCTCTTC
TTCGGCTGCAGAATATGTACCAACTAAACACGGACCACCTAGCTTCTGGC
GTTCTCCATCCTGGCGAGAAAAACGCACTGGGCACCTCGTTGAGTGCAAG
TGACTGTTTTGAGTTAGGCAAGAATCTCTGCGAGATTAAGGAGTACTCTT
ACGGTTCCGAGTGGCTATTGGAGGCCAGAAAACGATTGCACGGGAAACCA
TTAGGTTTTATATCACCCAATGTGAGCGATGTCGAGATACTGGAGCACCT
TTCATCCGCCTTCAATGGTTTGGGAAATCTAAAATTAGCTTATAAATTAA
ATAATGAAATATTGGATAAGAAGCCTGATCATGAGGAGGCTCTCAAGAAC
AAGATATTGTACGAAGGCAATTGGCTAGGGAGCGAAGTTTTGCTCCCAGA
AAGCAAGTGGAACTGCCTCAGATAGCAGAAAAAGAACAAAAGGAGAGCTA
CAAGCTATATACGCAAGTTTGTCGAGGAGAACTCCATCAATCTCCGCGGG
AGCAGCGGAATTTGAGTGCTGGCTCTACCACCAGGGAGTTCCCTACTATC
GTCTTTCCCCTTTCAAATCGAGCAATTGAATGTCGACCCTTTTGTCGCCT
ACGTCACGAGGTTCTGTGGGACAGCGAGATAAAAACAACCATGGAGCCGC
AAGGGTAATATTGGAGCGTTCAAGTGGTTCAAAGTGAAATTCACCCAAGT
GAGGTCCGATATCGCCAACCTGCCATGTCAATGCATCTGCTCCAGATTAC
GATGGAGAGTACCGACATTGACGAAGTGCGACCTGCACGGTCCAACTACC
GAAATTGGGGACACAGATAATA
FMO05727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaSG1-RA | 1708 | CG31014-RA | 24..1164 | 28..1158 | 5270 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30504720..30505402 | 884..203 | 3365 | 99.9 | Minus |
| 3R | 32079331 | 3R | 30505461..30505638 | 205..28 | 860 | 98.9 | Minus |
| 3R | 32079331 | 3R | 30504420..30504663 | 1123..884 | 855 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:25 has no hits.
FMO05727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:54 Download gff for
FMO05727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 24..1182 | 28..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:45 Download gff for
FMO05727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 12..1170 | 28..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:45 Download gff for
FMO05727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaSG1-RA | 24..1182 | 28..1172 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:45 Download gff for
FMO05727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30504362..30504663 | 884..1172 | 92 | <- | Minus |
| 3R | 30504721..30505399 | 206..883 | 99 | <- | Minus |
| 3R | 30505461..30505638 | 28..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:54 Download gff for
FMO05727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26330084..26330385 | 884..1172 | 92 | <- | Minus |
| arm_3R | 26330443..26331121 | 206..883 | 99 | <- | Minus |
| arm_3R | 26331183..26331360 | 28..205 | 98 | | Minus |
