FMO05728.5prime Sequence
1251 bp (1077 high quality bases) assembled on 2008-09-02
> FMO05728.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGTGGTTCAGC
TAATTGCGGTTTTTTTAAGTCTGGGCTTGGCTAATGCCCTGCCTGCGGAT
ACGGGGCGCGCCAGTTCGGTGACAACTGTCACCATTGTTAGGGGACACGG
TTACGAAATCGAGGAGCACGAGGTGCAGACCTCGGATGGTTACATCCTCA
CAATGCACCGCATACCGTACTCGAAGAACACTGGGTACGATGGGCCACGC
CCTGTTGTCTTCCTTATGCACGGTCTGTTGTGTTCCTCCTCGGATTGGGT
TCTTGCTGGACCTCACAGTGGGCTGGCATACCTGCTGTCCGAAGCGGGCT
ACGATGTGTGGATGGGTAATGCCAGAGGCAACACCTACTCCAAAAGACAC
GCCAGCAAGTCGCCGCTGCTGCAGCCCTTCTGGAATTTTGAGTGGCACGA
TATCGGAATCTATGATCTGCCCGCTATGATGGATTACGTCCTTTACTGGA
CAAATGTGACTCAACTTACGTATGTGGGTCACTCTCAAGGAACCACATCC
TTTTTTGTGCTCAACTCTATGATTCCGCGCTTCAAGAGTCGCATTCGATC
TGCTCATTTGCTCGCTCCTGTGGCCTGGATGGAGCATATGGAGAGTCCTT
TGGCCACGGTCGGTGGACCACTGCTTGGTCAGCCCAATGCCTTCGTCGAG
CTCTTCGGCAGCGCCGAATTTTTGCCAAATACACAGCTAATGAACCTGTT
CGGGGCTCTCCTCTGCAGCGATGAGGCCATTTCACAGTTCATGTGCACCA
ACACCCTATTCCTGCTGGGCGGCTGGAACTCGCCATATATCAACGAGACC
CTGCTCCCAGATATTATGGCCACCACTCCGGCGGGATGCTCAGTAAATCA
GATCTTCCACTACCTGCAGGAGTACATTCCGGATACTTCCGGCAATTCGA
CTACGGATCTACGCGCAACAAGAAGGAGTACAGCAGCAGGACCCCGCCGG
AGTACGATGTGGGAGGGCATCGATGGTGCCCCCTATCTTCTATTATTCTG
ACAACGACTACTTTGCTAGTCTGAATGACGTGGAATCGCCTTAGGTATTA
CATGAAACCGGAGCGCTTGAAGCGCATATGCATGACGGAAAAAAAGTGAT
CCTATCGCCTCTCGGGGGGACTGAATATAAGAATCTTATGGATCGGATTA
CGCCATAATATGCCCAGGCTTGACCTTCTTTGGGCGCGGGCCAGGTAGTG
C
FMO05728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8093-RB | 1555 | CG8093-RB | 87..1234 | 35..1178 | 5240 | 97.7 | Plus |
| CG8093-RA | 1334 | CG8093-RA | 87..1234 | 35..1178 | 5240 | 97.7 | Plus |
| Lip3-RA | 1434 | CG8823-RA | 374..508 | 259..393 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15214455..15215435 | 1110..128 | 4570 | 98.6 | Minus |
| 2R | 25286936 | 2R | 15215506..15215600 | 129..35 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 13371243..13371377 | 393..259 | 240 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:03 has no hits.
FMO05728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:38 Download gff for
FMO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 87..1148 | 35..1098 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:46 Download gff for
FMO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 1..1062 | 35..1098 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:50 Download gff for
FMO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 87..1148 | 35..1098 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:50 Download gff for
FMO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15214467..15215435 | 128..1098 | 99 | <- | Minus |
| 2R | 15215508..15215600 | 35..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:38 Download gff for
FMO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11101972..11102940 | 128..1098 | 99 | <- | Minus |
| arm_2R | 11103013..11103105 | 35..127 | 100 | | Minus |
