FMO05729.5prime Sequence
1267 bp (1071 high quality bases) assembled on 2008-09-02
> FMO05729.5prime
GCATACATTATACGAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCA
TACGCCGTTACCCGAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACC
TATGGTCTCGCAACCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGG
TTCTCCGGGTGAGTTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTC
AAAATGGCGCCTAGGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGA
CTACTATGCTCGTGAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCC
GGGCGCTATCTCCAGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAG
GCCAATGACTTGAAAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTC
TGAGAGTGGATTTCGGCCCAATTCACGCTGTATTATGCCTACCTACGACA
TCGTGGTCTGCTCCCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTC
ATCCTGCAGCAGACCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGT
GGAGAAGGACAACCTATTTACATCTGACATTGAGGAGGTCACAATTGAGT
TTGGAAAGGCGCAGCTGCGCAAGGCGAGAATCATCCTGAAAGAATCCGAT
GGCGACCAAGTGGCCGCGGTCCAGGAAGTCCTGCAATTGTGTGAAAACCA
GCTGAAATCCTTGGCTCTTTACTGTGTGGATGGAAAGGCGCAGGCGCCAC
ATGCTGTTATCTGTCACGGTGACTTCTGGAATAACAATATTCTCTATAGA
CATGAGCCTATTTCTGATCAACCTGTGGAGCCAAGCTGATCGACTTTCAA
ATGTCTCGCTATGCACGGCCGGTACTGGACATAGTCCATTACCTGTTTGC
CTGCACGGAAAACGATTGCGGGACGAGCACTTCCCGACTTTATGGATGCT
TACTACACACGATGGACAGAAATTGAAGTCCTGCATCTTTCCCTCGAGGG
CATATATCCGCGCAGCGTCTTCAATCGGCAATTGCAACAGTACGGCGTTA
CGGCTTGATAATGGGAGCATTTCGCTACCCTTTTCATTTCCATGCCAACG
AGTGATGATTCGGATACGGTCGAGGCATCCAAAGATTTCGCACATCCTCT
GATGACCCAGTCCAGAGATCTCTATGGAAGATCGAATGTCAACGCCGACT
ACATTGCAAGCGCATTCTGTAATGCGGAGGATACATTATATATACATCAG
CGTAAGCGAGGAAGCAC
FMO05729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-RA | 1527 | CG13813-RA | 52..1193 | 30..1155 | 5195 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20231720..20232496 | 30..806 | 3885 | 100 | Plus |
| 3L | 28110227 | 3L | 20232555..20232842 | 805..1084 | 1010 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:20 has no hits.
FMO05729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:00 Download gff for
FMO05729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..1206 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:24:04 Download gff for
FMO05729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 1..1155 | 30..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:29 Download gff for
FMO05729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..1206 | 30..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:29 Download gff for
FMO05729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20231712..20232496 | 23..806 | 99 | -> | Plus |
| 3L | 20232557..20232934 | 807..1167 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:00 Download gff for
FMO05729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20224812..20225596 | 23..806 | 99 | -> | Plus |
| arm_3L | 20225657..20226034 | 807..1167 | 92 | | Plus |
