FMO05731.5prime Sequence
1268 bp (1024 high quality bases) assembled on 2008-09-02
> FMO05731.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCAACCTCAGC
GATCGGCGGGGCGGGCGTGGGCGTGGCTGCCTCCGGTCCAGTGCGACGAC
CCACTGCCAGAGCCACCGCCGGAATCCAGAGACGCAGGGTGGTCAAGAAG
CACATCCAGCAAAAGTATATGCTCTGCGGCTTCGCCATACACGCTTTCCT
GGCCACACCCGCCTATCTGTACGGGAACGTGGTGGAGTCCGACAAGGATC
TGGTGTTGAGGATATGGCCGGCGATCGTTTACCAGGCCACAGGCGAGCTC
TGCCGCTCGATCATGGAGCACTTGGACACAGAGTACAGTGGCAGATCGAG
GGAGACGACGCAGTACCGACGGGTCTTCCTCCTGGCCACGCTCATTGCCT
GCGTATCGCTGATGGTCAGCGGGATCCTGTTCTCCTCCGCCTGGATCGTG
GTCACAACCACCACACAGGTGGTAGCTATTGTCTTCTACGGATTCTTTGC
AGGTATCGGCTCCAGCTTGTACCTGTGGAAGACGCACGTCATTCTGGAGG
CAGTGCGTCCGCGGGAGGACAAGTACGTCCGCAAGACGATCCACCTGTGC
GGCGAGGCCTTCTGCCAGCTGTTCCTCTCGTTCGTGTTCACCAGCCTGCG
CACCTTGTACGGCACCGCCCAGTCCATCGTACTGATGTCCGCCCTGCTGG
TGAACCTCATCCCGCTGAGCCTGATCATTACCAAGCATCGCGAGGATGCC
TTCACCACGAAGCGGATATCGGTGATCAAGGCGGAAACGGGATTCGCTGC
ACTGCCGCTGCGAGCCGCACTGGCGGCCAACTTGGTGGCGGACCAGCTGG
ACGGATTGACACGCTCTCATGGCGGAATCCGGCCACCACCGAAATGGCCA
CGCCCAGTGGTGCCGTCGCCGCCGCTGTGGTGGTGGACACGCACAGCACT
ACATGCTGGCCACCGATGAGCGTATGTGACGTATGTGAATCCCAACGGGT
TGAGATTATGAGATCATACCCGAGAAGACGAGACGGTGTCCATGATGCGG
TCGAACAATGCGACCATCGAACAATTATGCCATGTCCGCCTCGCGAAGTC
CCACAGTCCTGGTTCCATGGACGTTTCTATCCATGACGCCCCAGCATCTT
TTGGCAAGAACGGAACTGGTTCGTAAGTTCTTAACGTAATCGATATGCCA
CTGCCCGCACTGGGCGAGGTCCAGTCGAATACCCCTGTGTGTGTGATACT
ATGCGTAGTGCAAAATAG
FMO05731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14195-RB | 2696 | CG14195-RB | 725..1870 | 37..1170 | 5225 | 97.7 | Plus |
| CG14195-RA | 2123 | CG14195-RA | 152..1297 | 37..1170 | 5225 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19209681..19210342 | 1154..501 | 2650 | 96.8 | Minus |
| X | 23542271 | X | 19210836..19211148 | 505..193 | 1565 | 100 | Minus |
| X | 23542271 | X | 19211202..19211358 | 193..37 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:58 has no hits.
FMO05731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:08 Download gff for
FMO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 145..1297 | 29..1170 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:50 Download gff for
FMO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 1..1146 | 37..1170 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:48 Download gff for
FMO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 145..1297 | 29..1170 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:48 Download gff for
FMO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19209661..19210340 | 503..1170 | 96 | <- | Minus |
| X | 19210839..19211148 | 193..502 | 100 | <- | Minus |
| X | 19211203..19211365 | 29..192 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:08 Download gff for
FMO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19103694..19104373 | 503..1170 | 96 | <- | Minus |
| arm_X | 19104872..19105181 | 193..502 | 100 | <- | Minus |
| arm_X | 19105236..19105398 | 29..192 | 98 | | Minus |
