FMO05733.5prime Sequence
1130 bp (1023 high quality bases) assembled on 2008-09-02
> FMO05733.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCTTCTTCTCTTCTT
GGTTTTACTGAGCGGCCTTCAGGTGCAGGGCTGTGTCAAACAAGCTCACG
AGTGTGTGCCGCTGTGCAATGATTGTGGAGCCTCGGGAAAATGCCTTTTG
CCCAATGTGTGTTTGTGTGGAAAGGGTTATGTAAGTCGTAAGGATCACGG
TCACTGTGAGCCGGAGTGCAGTGAGTCCTGCGTGAACGGAAAATGTGTGG
CACCGGATGAGTGTGAATGCCTTGCTGGCCATCGTTTCGTGAATGGCTCT
CAAACGGCATGTGAGCCAATTTGTGTGGAGGACTGTGCCAATGGTCGTTG
TCTGGAGACGGGAAAATGCCTGTGCAACAATGGCTATCAGCGGGATGAAA
AGCTTAAGAAATGTGTGCCCATCTGCCAGGATGCCTGCTATCATGGCGAC
TGTGTGGCGCCCAACGAGTGTCGCTGTCATCCCGGTCATGAGCAGCGCTT
GGGAGTGCCGTGGATTTGCGATCCGATCTGCTCGAGCGGCTGCGCCAATG
GCTATTGCCAGGGTGCCGAGGTGTGCGCCTGCAAGATGGGCTATGCCCAC
AAGGATAACACCCTTGCCTCAGGCTGTGAGCCTGTGTGCAATCCACCCTG
CACGAATGGCACTTGCATCTCACCCGGCCACTGCGCCTGCTCCGAAGGTC
ACGTATTTGCCGAGGGATCGCGTCACGAGTGTGTTCCCAGCTGCCGTTCC
GGTTGCGAGAATGGATATTGTAGTTCTCCTGGCCGCTGTGAGTGCCACGA
GGGATTCGAGAAGACATCGCCGCACCGCTGTTCACCCACATGCCGACCGG
GCTGTGGCAGAACTCCCGCTGCGCCGCTCCAGACACCTGGTGCCTGCGAT
GTCGGCTACGTCTTTGTCAACGGCAGCACCACCGAATGCGAGCCCTTCTG
TCCCAGGGACTTGCCGGAATGGATCTGCCAGTAGTCCAGGTGTCTGCACA
TGCTGGAAGGTTTCAGGGCCCTTCCTCTCGTCTACTGCATACAGTTTGGC
TCGAAAACCTTGCATTCATGGGCAGTTGGGTGGGGGCGCCCAACGAAGGT
GTCCTGCCTCACGGCTACCGAACCAATTCA
FMO05733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC2-RA | 2343 | CG18146-RA | 85..1167 | 34..1121 | 4940 | 97.8 | Plus |
| NimC2-RC | 2819 | CG18146-RC | 308..1326 | 98..1121 | 4620 | 97.7 | Plus |
| NimC2-RB | 2502 | CG18146-RB | 308..1326 | 98..1121 | 4620 | 97.7 | Plus |
| NimC2-RC | 2819 | CG18146-RC | 85..149 | 34..98 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13980616..13981520 | 99..1004 | 4295 | 99 | Plus |
| 2L | 23513712 | 2L | 13980210..13980274 | 34..98 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:34 has no hits.
FMO05733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:58 Download gff for
FMO05733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RA | 85..1167 | 34..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:54 Download gff for
FMO05733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18146-RA | 51..1133 | 34..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:46 Download gff for
FMO05733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RA | 85..1167 | 34..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:46 Download gff for
FMO05733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13980210..13980274 | 34..98 | 100 | -> | Plus |
| 2L | 13980616..13981538 | 99..1017 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:58 Download gff for
FMO05733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13980210..13980274 | 34..98 | 100 | -> | Plus |
| arm_2L | 13980616..13981538 | 99..1017 | 98 | -> | Plus |
