FMO05734.5prime Sequence
1258 bp (1064 high quality bases) assembled on 2008-09-02
> FMO05734.5prime
CATTATACGAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGA
CCAGGAGCACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACA
ATGTGGGCCGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAAC
ATGCAGCAGGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCA
CTCTGGCGACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATA
ACTCCGCAGGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCC
ACCAATCTGATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACT
GTACAACCTCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGC
GCGACTTCAAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAA
ACGGAGTCGGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGT
GCGCAACAAGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCA
TTAAGGATACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGAC
GACATGCTCGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAA
CATCCTGCGGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGC
GTTACAATAAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAAC
ACGGTGCCGGAGGGCGGATCCCAGCCAATCTGGGTACGACTCGCCGAGGA
CACGGCAAGGCCAAGGCGGCCCAGTTTATGGCCCAGATCGGAGTGGCAAT
GGTGGCGGAGGCGGTGGTCCGCCCCACATGGGCCCAGGTGGACCGATGCC
CCCACCTCATCACCACAATAATCACCATCACAACAACCACCACAATCCGC
ATATGCCGCGCATCATCATCAGCCGCAGCATCACACCAGCATCCGCAGCA
CATCCGCAGCTGCACCACATGCAGCACCACCATCCCACAACCACAACAAC
AATTCACCCCAACAACCACATCTAAACACCAACAACAACACACCACAACA
TGGGGCGGCCGCAATCCGCCCCCATGCAGCCAATGGCACCCGATGGGCAT
GAGAACATGGCAATGGGCGTAAAATTGGTAATGGCATGGGCAATGGCCAT
GCCATTCCCGAAGCGCCGATGGTGTGGTGGTACCCCGCACTGTTGACACT
GGGAGGGT
FMO05734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssx-RE | 3635 | CG3056-RE | 161..1375 | 24..1230 | 5340 | 96.9 | Plus |
| ssx-RD | 2945 | CG3056-RD | 161..1375 | 24..1230 | 5340 | 96.9 | Plus |
| ssx-RB | 3055 | CG3056-RB | 161..1375 | 24..1230 | 5340 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1371449..1371774 | 86..411 | 1630 | 100 | Plus |
| X | 23542271 | X | 1372460..1372948 | 701..1184 | 1600 | 93.5 | Plus |
| X | 23542271 | X | 1372084..1372267 | 518..701 | 920 | 100 | Plus |
| X | 23542271 | X | 1371913..1372025 | 410..522 | 565 | 100 | Plus |
| X | 23542271 | X | 1371307..1371371 | 24..88 | 325 | 100 | Plus |
| X | 23542271 | X | 7085624..7085730 | 406..300 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 91..158 | 142 | 67.6 | Plus |
FMO05734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:49 Download gff for
FMO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssx-RB | 157..1315 | 18..1173 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:24:07 Download gff for
FMO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3056-RB | 171..1329 | 18..1173 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:39 Download gff for
FMO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssx-RB | 157..1315 | 18..1173 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:39 Download gff for
FMO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1372086..1372267 | 520..701 | 100 | -> | Plus |
| X | 1371451..1371774 | 88..411 | 100 | -> | Plus |
| X | 1371303..1371370 | 18..87 | 95 | -> | Plus |
| X | 1371915..1372022 | 412..519 | 100 | -> | Plus |
| X | 1372461..1372964 | 702..1200 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:49 Download gff for
FMO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1266119..1266300 | 520..701 | 100 | -> | Plus |
| arm_X | 1265484..1265807 | 88..411 | 100 | -> | Plus |
| arm_X | 1265336..1265403 | 18..87 | 95 | -> | Plus |
| arm_X | 1265948..1266055 | 412..519 | 100 | -> | Plus |
| arm_X | 1266494..1266997 | 702..1200 | 93 | -> | Plus |
