FMO05735.5prime Sequence
1235 bp (966 high quality bases) assembled on 2008-09-02
> FMO05735.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGCGAATAAT
GATCAAGGGCGGCGTGTGGCGCAACACGGAGGATGAAATCCTCAAAGCTG
CGGTTATGAAATATGGCAAGAACCAGTGGAGTCGAATTGCCTCCCTCCTG
CACAGAAAGTCCGCCAAGCAGTGCAAGGCCAGGTGGTACGAGTGGCTGGA
TCCCAGCATCAAGAAGACCGAGTGGTCCCGTGAGGAGGACGAGAAACTGC
TCCACTTGGCCAAGCTGATGCCGACGCAGTGGCGCACCATAGCCCCGATC
ATCGGACGGACGGCAGCCCAGTGCCTGGAGCGCTATGAGTACTTGCTAAA
CCAAGCCCAACGCAAAGAGGATGGCGAGGACACGATGGATGATCCTCGCA
AGTTGAAGCCCGGAGAGATTGACCCCAATCCAGAGACCAAGCCGGCGCGG
CCCGATCCCAAGGACATGGACGAGGACGAGCTGGAAATGCTGTCCGAGGC
ACGCGCCCGCTTGGCCAACACGCAAGGCAAGAAAGCCAAGCGCAAGGCTC
GCGAAAAGCAACTGGAGGAAGCCCGCCGCCTGGCCACTCTCCAAAAGCGG
CGCGAACTTCGTGCCGCCGGAATTGGCAGCGGAAATCGCAAGCGGATCAA
GGGAATAGACTACAACGCCGAGATTCCCTTCGAAAAGCGACCTGCCCACG
GATTCTACGACACTTCCGAGGAACACTTGCAGAAAAATGAACCCGACTTC
AACAAGATGCGGCAGCATGACCTAGATGGAGAACTCCGCTCAGAGAAGGA
GGAACGCGAACGCAAGCGGGACAAGCAGAAGCTGAAGCAGCGCAGAGAGA
ATGAAGTGCCCACCGCAATGCTGCAAAACATGGAGCCCGAGCGGAAGCGC
TCCAAACTAGTCCTGCCTACGCCGCAGATTTCCGACATGGAACTACAGCA
GTAGTCAAGCTGCGTACGCGACAGTGTGATGGCAAGGAAATTGCCGGTGA
ACAGCGGCATAGAGACGACGGATGCTTTGCTAGCTGACTACTTCTTTACA
CCCCAGGTAGCAGCTACTCTACGTACTCCGGGCTCGTAAACCGATCGCGA
TCATGCAGGAGGCCCAAAAATGAATGGACCTCTACCGACCATGATCGTCA
TCTAAAGGTGGCTGAAACACCGGTGCCGGATCTAACTCTCTCGGCGGGGT
GTGGCCAGGGCGGGTCTCATCTCACCGCTAAACCA
FMO05735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 129..1223 | 37..1132 | 5065 | 97.9 | Plus |
| Cdc5-RA | 3346 | CG6905-RA | 256..1350 | 37..1132 | 5065 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 359919..360687 | 1119..350 | 3385 | 97.4 | Minus |
| 3L | 28110227 | 3L | 360749..361016 | 347..80 | 1340 | 100 | Minus |
| 3L | 28110227 | 3L | 361083..361128 | 82..37 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:07 has no hits.
FMO05735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:31 Download gff for
FMO05735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 252..1356 | 29..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:39 Download gff for
FMO05735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 252..1356 | 29..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:37 Download gff for
FMO05735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 252..1356 | 29..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:37 Download gff for
FMO05735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 360749..361014 | 82..347 | 100 | <- | Minus |
| 3L | 361084..361132 | 29..81 | 92 | | Minus |
| 3L | 359919..360689 | 348..1119 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:31 Download gff for
FMO05735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 359919..360689 | 348..1119 | 97 | <- | Minus |
| arm_3L | 360749..361014 | 82..347 | 100 | <- | Minus |
| arm_3L | 361084..361132 | 29..81 | 92 | | Minus |
