FMO05736.5prime Sequence
1180 bp (1072 high quality bases) assembled on 2008-09-02
> FMO05736.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTTAGGGAAAATGTCG
CGGAACGTGACGCTCTCGGATGAACAAAGTCGGCTTAATGCGCGTCTGGA
GGCGCACATGGTTTACATATGTCCGGAATGCGGCAAGGCGTTCCGCACTC
AGGCGGAGTGGCGACAGCATCTGAACACGAAACACGACTATCTAAAGAAG
ACGTACTCAGATTTCAACTTCATCCAGATCGACCAGCGATTCCATGAGTG
CCAGCTGTGCTTCAAATGGGTGGAGAATGCCCACAAGACAATCGCCCTCC
TGCAGTACCACTACTTTATGCATCTGGAGCACAGTGAAACCTACCGCTGC
GTGCACTGCCGCATGGCGTACACGAGGCGCCGGGCTCTGAACGTCCACCT
ACTGGACACGCACATGCGGGAGATCGAGAAGTACGAGAACAAGCTGCGCC
AGATGAAGCGGCAGCAGGCGAAACCCACTACAGCGGCCGCACCAGCTGGA
AATGCAGAGAAGCCGATGGCTGTGAAGCCGCGTGGGCGTCCCAAAGGTTC
CACGAACAGAAAGCAAAATGATCTGCTGCAAAAGGCGCTGATGGACATTG
ATCTGAACACAGAAATGGAAAAGTCCCCAGTGACAGCACTAGCGGCTCCT
GTAAACGAACCTAAGCCCATTTCAAATGTCAGCGAGCTGAATCTAGATCG
GTGTTTGAATGCCTACGAGGACATCGTGCGCAAGGAGGAGAAAGAGGTGG
TGCCGAAGTATGACGACGAGTTGGATGCGCTCTGCAAGGAGTTTTTTGAT
GATGGCCCCTCCGCCGGCAAAGGAGAAGCTAATGAGGAGCAGCAGCAAGA
CGATGCGCACCTGCAGCAAGGAAATCAGGAGGTGGTCATCATCGAGATCG
ATGCACTCGGCAAGGAGGAAGTGGCCCAGCTGAAGAAGGAAATGAAGTCG
GACCCAATAGTCAACCGACTAGCGTCGACGCATCCTCTACGACGCCCAGC
CGCGACTCAGACACGGAAATGTCCACCAACGGCTCACGAGCTCATATTCG
TACTTGGTGTCGAAGTGGCGGCAAGAAATCGCCCTCGATGACGTGGCGGC
ACCCTATCAAGAAGCCGGACTTCGAGACCATAATTCGAAGAACGGTTTTA
AGATTCCTGGGAGTCCGGCGGCAGGCCAAT
FMO05736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1303 | 33..1168 | 5120 | 97.6 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1182 | 33..1168 | 5120 | 97.6 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1182 | 33..1168 | 5120 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379100..6379955 | 1033..179 | 4120 | 99.5 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 179..33 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:22 has no hits.
FMO05736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:51 Download gff for
FMO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1118 | 33..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:40 Download gff for
FMO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1118 | 33..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:42 Download gff for
FMO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1118 | 33..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:42 Download gff for
FMO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379080..6379956 | 178..1053 | 98 | -> | Minus |
| 3R | 6380020..6380164 | 33..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:51 Download gff for
FMO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204802..2205678 | 178..1053 | 98 | -> | Minus |
| arm_3R | 2205742..2205886 | 33..177 | 100 | | Minus |
