FMO05737.5prime Sequence
1066 bp (827 high quality bases) assembled on 2008-09-02
> FMO05737.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGACTGAGCAGAGTATTATC
GGGGCGCGGGCCTCTGTGATGGTGTACGATGACAACCAGAAGAAGTGGGT
GCCATCGGGCAGCTCGTCGGGATTGAGCAAGGTGCAGATCTACCACCACC
AGCAGAACAACACGTTCCGTGTGGTGGGACGAAAGCTGCAGGATCACGAG
GTGGTCATCAACTGCTCCATTCTGAAGGGACTGAAGTACAATCAGGCCAC
GGCAACATTTCATCAGTGGCGCGATTCGAAATTCGTTTACGGCTTGAACT
TCTCGAGCCAAAATGATGCGGAGAACTTTGCTAGGGCCATGATGCATGCC
CTGGAAGTGCTCAGTGGTCGCGTGGCGAACAACCCAGGTGGACCGCCCAC
AAATGGCAATGGCTATGAGGAGGACATGGGCTATCGCACGATGACCAGCG
AGGATGCAGCCATACTGCGTCAGAACAACAGCATAGGTGGGCACGTCACG
CCCTCGGCCCAGACGCCCACCTCGCAGACCAACCAGAATAACATCCCCCA
GAGCCCGCCGACGCCCCAGGGTCATCATCGCACCAGCAGGAATTCCCTCA
GCGCCCCACCCGGCACCACAGCCCCAACAGCATCAGCAGCAAGCAGCAGG
CGCAGCAAATGGGTCAGCCAGGATCCCACTATGGACCCACTGGAAATGGA
CCCATTTCGAATGGCCTGCCACAGCAGTGAACTCACAGATTCCGCCGGCA
CCGCACAACAACCACAACAGCACAGTTTCAGCAGCAGCAGCAGCAACAGC
AATATCAGCAAATGGTCCAGGCGGGCTATGCGCCCTCTCAGTATCAGCAA
CCCACTACGTGCTCTCCAATTCTAATCCCATCTACCTGTGCACCAATACC
CGACACAGCAGGCGCATCACAGCACCGCAAGCGCCACAGCCGCCGCTCAG
ACGGTGGAATGTACATGGTGGGTCATGGTCATCACGAGCTCGCGAGCCCC
ATCAGTGTTGTGTACGCCAGCCAGCATCAATGCTCCCGAAGGGCCATCCA
CAGGACCCTCAGCGAC
FMO05737.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ena-RD | 2878 | CG15112-RD | 406..1449 | 30..1062 | 4645 | 97.2 | Plus |
| ena-RB | 3669 | CG15112-RB | 695..1736 | 35..1062 | 4580 | 96.9 | Plus |
| ena-RE | 3446 | CG15112-RE | 482..1516 | 30..1062 | 4415 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19158734..19159057 | 35..358 | 1620 | 100 | Plus |
| 2R | 25286936 | 2R | 19159120..19159353 | 357..590 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 19159781..19160035 | 588..841 | 975 | 96.5 | Plus |
| 2R | 25286936 | 2R | 19160177..19160410 | 839..1062 | 545 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:23 has no hits.
FMO05737.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:16 Download gff for
FMO05737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ena-RD | 406..1449 | 30..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:59 Download gff for
FMO05737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ena-RD | 393..1436 | 30..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:08 Download gff for
FMO05737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ena-RD | 406..1449 | 30..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:08 Download gff for
FMO05737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19160180..19160410 | 842..1062 | 91 | | Plus |
| 2R | 19158734..19159055 | 35..356 | 100 | -> | Plus |
| 2R | 19159120..19159352 | 357..589 | 100 | -> | Plus |
| 2R | 19159783..19160035 | 590..841 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:16 Download gff for
FMO05737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15047288..15047540 | 590..841 | 96 | -> | Plus |
| arm_2R | 15046239..15046560 | 35..356 | 100 | -> | Plus |
| arm_2R | 15046625..15046857 | 357..589 | 100 | -> | Plus |
| arm_2R | 15047685..15047915 | 842..1062 | 91 | | Plus |
