FMO05738.5prime Sequence
1271 bp (1025 high quality bases) assembled on 2008-09-02
> FMO05738.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTCCAATATGGA
TCCAAGTGATGTCCGCAGTACCGCCCAGCTCATCCTGGCCAACGCTCGGC
AGGGAAATAGCGCTTACAACATGCAGTATGATATGTCACGGGCACATTCC
ATAAACCTGATTACGGAGGACTTCTTGGCCGGTTATATGCAGGATGGCAG
GATGTCCGTGGTTCGAAGGTTTTTCTGCCTCTTCGTCACATTCGACTTGG
TCTTCGTTTCGCTGCTGTGGCTCATTTGCATTGTGATCAATGGAGACAAT
ATATTCACTGCCTTCCACAAACAAATCGTGGAGTACACCATCTACAAATC
GCTCTTTGATGTTGTGGCAGTCGCTATCTGCCGATTTTTGGTGCTCATAT
TTTTCTACGCCATATTGTACATCAATCACTGGTCCATCATAGCGCTCTCT
ACAAGTGGGTCTTGCTTGTTCCTCATCTCGAAGGTGTTTGTGTTCGATTG
GCTGGATTCAAAGCAGCAGGTATTTGAGGTAATCCTCATAATAACCTCGT
TCATACTGGCTTGGGGAGAAGCCTGGTTCCTGGACTGTAGGGTGATTCCT
CAAGAGCGACATGCCCAACACTATTTCCGGACTATGACTTCAAATGATCG
CACACCCATGGAACAGCCTGCCATTTTGATTGAGCAAGAACGGCCTCCGC
AAAGTGTAACCGATTTTTATTCACTCATGGACACGGCTCGTCATTCCGAC
GAGGAGGATGAGTTGGATGATGAGTACACACAAATGGGATTGGATTGCCT
TCGAAAGCCTACGAGATCATCGAGTCAAGTGACTGGAAGGTGGAAAAGTT
ACCAGAAAGGCGACACCATACACAGCACTCAGCGCGACAGATTGGAAAGA
TCTACAGTTGACGGCCCGCATCAGTATCCTGCAAAGGCTCTGATGGAAGA
TCTGTTCTATCGCATGAAGACTGTCCAAGTGGAATCCTGCTCTTTTGGAG
TCCAGATAGTACGCAAAATCCACTCCTACACCGATATTAACTATCAGTTC
CGTGGGCGGAGAAGGTGCATGTGAAAAGCCGCGACTCTTGAACTGCGGTC
TTGTAGCTCTTTTACATGTTCCAATTCGCATGACATAGAACCGCTCACTC
TACACGCGAGATATGGACACCACTCTATCCGCCTGCGCAGGGATGGTTAC
ATCAGTGTACTCACCCATGTGCAGTACGCTGAGTGGAGAACGTTTCTCAT
CTCTCTCACAGGAGACGCCCA
FMO05738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Start1-RC | 2337 | CG3522-RC | 369..1469 | 32..1116 | 5015 | 98 | Plus |
| Start1-RA | 2170 | CG3522-RA | 202..1302 | 32..1116 | 5015 | 98 | Plus |
| Start1-RB | 2360 | CG3522-RB | 369..1469 | 32..1116 | 5015 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24575361..24575520 | 285..444 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 24575151..24575299 | 137..285 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 24575877..24576011 | 632..766 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 24575691..24575823 | 499..631 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 24576193..24576338 | 765..906 | 535 | 95.9 | Plus |
| 2R | 25286936 | 2R | 24574985..24575089 | 32..136 | 510 | 99 | Plus |
| 2R | 25286936 | 2R | 24576400..24576505 | 913..1014 | 330 | 96.2 | Plus |
| 2R | 25286936 | 2R | 24575575..24575629 | 444..498 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:47 has no hits.
FMO05738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:07 Download gff for
FMO05738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Start1-RB | 362..1479 | 26..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:01 Download gff for
FMO05738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Start1-RA | 344..1461 | 26..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:55 Download gff for
FMO05738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Start1-RB | 362..1479 | 26..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:55 Download gff for
FMO05738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24574978..24575089 | 26..136 | 96 | -> | Plus |
| 2R | 24575151..24575299 | 137..285 | 100 | -> | Plus |
| 2R | 24575362..24575520 | 286..444 | 100 | -> | Plus |
| 2R | 24575576..24575629 | 445..498 | 100 | -> | Plus |
| 2R | 24575691..24575823 | 499..631 | 100 | -> | Plus |
| 2R | 24575877..24576010 | 632..765 | 100 | -> | Plus |
| 2R | 24576194..24576346 | 766..913 | 96 | -> | Plus |
| 2R | 24576401..24576505 | 914..1014 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:07 Download gff for
FMO05738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20463924..20464028 | 914..1014 | 96 | -> | Plus |
| arm_2R | 20462501..20462612 | 26..136 | 96 | -> | Plus |
| arm_2R | 20462674..20462822 | 137..285 | 100 | -> | Plus |
| arm_2R | 20462885..20463043 | 286..444 | 100 | -> | Plus |
| arm_2R | 20463099..20463152 | 445..498 | 100 | -> | Plus |
| arm_2R | 20463214..20463346 | 499..631 | 100 | -> | Plus |
| arm_2R | 20463400..20463533 | 632..765 | 100 | -> | Plus |
| arm_2R | 20463717..20463869 | 766..913 | 96 | -> | Plus |
