FMO05739.5prime Sequence
1245 bp (1041 high quality bases) assembled on 2008-09-02
> FMO05739.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGGCGCTCGGG
ATCAGACGGATCCCCCGCTGCTCCAGCTCGAGGACGAGGTGGATCTCATC
GGGGACTTTGCCAAGGACCAACCTCCGCCCAGAAACCAACTGTCTCCGCT
TTTAAATGGCTTCGAGTCGACAAGCAACCAGTTGACCACCAAAGTTGAGA
TCAACACCGTCGGCATGGGCAAACGCAAGACAAGGAGAAGAGGGAAAAAG
GCGCGGGAACCCATGCTACTGTCGGTGGACGACGAGGATGACGAGGAAGA
GGCGCAAGAGGAGAGGAACCACACCAACGGGCTGCCGCCAGGCGAGGAGA
GTGCCGGCGGCGATGCTGTTATTCAGAAACCGCAACTGGATAACTTGGTC
ATGCATTACGACGACCAGATCGACGACGAAGATGGCGAAGAAGCTGTGCT
GCTGAAGAGAAGCTCAAACCCGCGCAACCAAAGACTCAAAGGTAGCGCTG
AGGATAGCATCGACAGCAGCAGCCAACAGCCACCGATTATTTGTCACATC
GCACCCGCGAAGGTAGCCTCATCTGCATTGACATCTCCGCTGAAAACCAC
TTCGCACACTGCTCTCGCCCGTCATCCGCATGACGAGGCCGACGACATCT
GCCTGGTGCCAGAAATCGACTTCGAGGGCATGTCCACGGACGCCGGCAGC
GACAACCGGGAGTCACAGCCGCTCTTGGGGGGAGGCAATGCCAGTCACGG
AAGTCGCATCAGCGAGCTTTTGGGCGGACTAGACGCGGGCACGATCATGT
GGAGTTTGTATCGAACACATTTGGCGATGACCCGCTTTTCTCGGAGATCG
TGGCGAACGCGGAGGGGCCATCGAGAATGGTGTGCTGCCCGAGCGCATTT
ACCAGGGTAGCAGTGGTTCCTACTTTGTCAAGGATGCCTCCCATCAATGC
CTGGCCGTATTTAAGCCAAAGACGAGGAACCCTATTGGCAGACTGAATCC
GAGTGGACGAATGGATGCTAAGCTGTGCTGCCCGTGGTGTTTGGCGAGCT
TGCTTGATTCCCAATCAGGTACTTCTCCGATCAGGACCAGCCTTGTTGAT
TCGAAACTCAATCTGATGTGTTCAAGGACGCGCGAGGTGGTGCAGAATGT
GCTGAGAGCTTTACTACGCCACGCATTTGATCACAAAGCAACTGAAAGCC
ATAAAGACCATTCGGTCGTCACTCTACGAGTGAGCCTCTCTCTCT
FMO05739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 326..1482 | 33..1177 | 5080 | 97.1 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 353..1509 | 33..1177 | 5080 | 97.1 | Plus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 591..952 | 827..1177 | 1130 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5562263..5562896 | 830..198 | 3105 | 99.7 | Minus |
| 3R | 32079331 | 3R | 5562965..5563131 | 199..33 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560194 | 944..826 | 535 | 98.3 | Minus |
| 3R | 32079331 | 3R | 5559673..5559802 | 1069..945 | 310 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:35 has no hits.
FMO05739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:43 Download gff for
FMO05739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1466 | 26..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:02 Download gff for
FMO05739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 290..1412 | 26..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:54 Download gff for
FMO05739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1466 | 26..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:54 Download gff for
FMO05739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5559673..5559802 | 945..1069 | 93 | <- | Minus |
| 3R | 5560075..5560193 | 827..944 | 98 | <- | Minus |
| 3R | 5562267..5562894 | 200..826 | 99 | <- | Minus |
| 3R | 5562965..5563140 | 26..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:43 Download gff for
FMO05739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1385395..1385524 | 945..1069 | 93 | <- | Minus |
| arm_3R | 1385797..1385915 | 827..944 | 98 | <- | Minus |
| arm_3R | 1387989..1388616 | 200..826 | 99 | <- | Minus |
| arm_3R | 1388687..1388862 | 26..199 | 98 | | Minus |
