FMO05740.5prime Sequence
1282 bp (1022 high quality bases) assembled on 2008-09-02
> FMO05740.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAA
TATAAATGGCTTGCAGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATG
AAACCCTAACTATTCACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCC
GAGACTTTGATGAAACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGC
GCGTGTGAAGTTTCCCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGG
ATCCATTGCATGTCGAACAGGATTACCAGCACCCATTGAACGTCCTGAAA
CTGAAGTATGCCATGGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCA
CCTGAGACCCATGGATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACA
CAATGTCCACGGCTTTGGGACTACGGGTTCAGATACCCCTTCTGCTAGGG
ATTATCCATGCCAAGGACAAGGAGCTGAACCAGTATCGCACCGAGGGATG
CCAGCTGCGCAAAGTGACTGTGGAAACCAAGCCCTTTGATCTCGAGGCTT
TTATGAATAAGCACAAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAG
GCGCAGAGTACTTTTTTTGCTGATAAGCCATCGCCTAATTGGACATCGCT
TTCTTCGCCATGGGCACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCT
ACTTTGCTTCTTCGAAGGCATCAAAGCCCAAAAAGAAGCTCCTCGCATTA
GGAAGCGCAAGGCTCTTGAAATCAATACCAATCATATGGAGCGCAAGGTA
TGCAGCGCCGCTCCAATCCGCTTGTCGAGTACAAAGCTCGCAGAGTTCCC
AGAGACAAACGTAATTTAATCTTAAAGTAGAGCTAGCGCCAATGGACACC
AAGAATGATCTCACTGATGATGACGAAGAGTCATCCACATCTTCGGGGCT
TTCCCAGGATGGTCGGCCAAACTAACCAAATTAATCCAACGTCGGAAGTG
GTGTATATGAACTTGCTCTCAAGAACAGTATGCTTCTTCTGAGATGATGA
TGCTTCTTTAAAATGGGGATCTTCTTCAAATATAGGATGCTTCTTCAAAA
TGAAGGAGCTTCTTCAAAGAATGAGAATATCTCTCTTTCAAAGAGAAAGA
GCTCCGTCTAAAGAGAAGAATACTTCTCTCCTAAAAGAAAAGATGCTCTT
CTCGGAATTGAAAGGTCAAGGAGGACCTCAAAGCTTCTATTCGCCTGAAG
AAGGTGTAACTCTTTAAGAGATTTCGAACGTC
FMO05740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12728-RB | 2374 | CG12728-RB | 78..1238 | 31..1177 | 5035 | 96.9 | Plus |
| CG12728-RA | 1746 | CG12728-RA | 78..1238 | 31..1177 | 5035 | 96.9 | Plus |
| CG32756-RB | 2397 | CG32756-RB | 80..1188 | 31..1120 | 4770 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5943375..5943612 | 513..752 | 1105 | 98.3 | Plus |
| X | 23542271 | X | 5943671..5943989 | 750..1058 | 1065 | 96.2 | Plus |
| X | 23542271 | X | 5946457..5946694 | 513..752 | 1060 | 97.1 | Plus |
| X | 23542271 | X | 5942903..5943088 | 190..375 | 930 | 100 | Plus |
| X | 23542271 | X | 5945981..5946166 | 190..375 | 930 | 100 | Plus |
| X | 23542271 | X | 5946753..5947074 | 750..1058 | 925 | 93.8 | Plus |
| X | 23542271 | X | 5942683..5942841 | 31..189 | 795 | 100 | Plus |
| X | 23542271 | X | 5945761..5945919 | 31..189 | 795 | 100 | Plus |
| X | 23542271 | X | 5943153..5943293 | 374..514 | 705 | 100 | Plus |
| X | 23542271 | X | 5946231..5946368 | 374..511 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:38 has no hits.
FMO05740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:06 Download gff for
FMO05740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12728-RA | 73..1244 | 26..1185 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:03 Download gff for
FMO05740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12728-RA | 71..1242 | 26..1185 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:30 Download gff for
FMO05740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12728-RA | 73..1244 | 26..1185 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:30 Download gff for
FMO05740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5942678..5942841 | 26..189 | 98 | -> | Plus |
| X | 5942903..5943088 | 190..375 | 100 | -> | Plus |
| X | 5943155..5943293 | 376..514 | 100 | -> | Plus |
| X | 5943377..5943611 | 515..751 | 99 | -> | Plus |
| X | 5943673..5944120 | 752..1185 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:06 Download gff for
FMO05740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5836711..5836874 | 26..189 | 98 | -> | Plus |
| arm_X | 5836936..5837121 | 190..375 | 100 | -> | Plus |
| arm_X | 5837188..5837326 | 376..514 | 100 | -> | Plus |
| arm_X | 5837410..5837644 | 515..751 | 99 | -> | Plus |
| arm_X | 5837706..5838153 | 752..1185 | 92 | | Plus |
