FMO05741.5prime Sequence
1262 bp (1035 high quality bases) assembled on 2008-09-02
> FMO05741.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGCGTGGACGCGGCG
GATTCATTCCACGTGGTGGTGGCACCACTCGCGGTGGCTACTACAATAAT
CGCAATTCCAGCAACTACGTTAATACTCGCACCCAGGGCAATTACCGACC
CAATAATGGCCGCTACGAGAATAACTATCACAACAACAACAATCGCTACA
ACAACCACAACAACAGCGGCGGAGGAGCAGGAGGCAACAGCCACTACGAC
AACAGGAGTCGGGACAAGTTCACTCACCACAACTCGAGCAGCGGGCGCTA
CGAGTCCAGCTCCTCGAGCCACAAGCGCAGCTATGACTCATCTCGCGACC
GCAGCGATGATCGCAAACGCCCGCGTCAAGACGATTACCGTCGCACGTCC
TCGTCGAATGATCGCAGCGATCGACCCTCGTCCTCGTCGCAGAACATTGG
CTCCTCGTCATCGAACTATCATCAGCGGAGCAGCACCGGCGGTGGTGGTA
ATAACGGCGGGAGCTCGAGCTCCTACCGCCCACGCGATGATTCCACCAGC
GGCAGCCGGCATCAGCGGGACGGATCGATGGGTCCTCCGAAGCGGATGAT
GCGTAGCGTGGCCGGCACCAACTATATATCCCGACCCCGTGGCACAATGT
CGATGAGGGGCGGCATGATGCGCACCGGGATGCGGGTGGGAGGAATGCGC
GTTGTGCGCACCAGGGTCAACGAGTCGAATGACCTGCGCACCATGCGCCG
CCAGCTGCTCTATGCACAGCAGAAAGACCGGGCTCGCCTGCTCAAGATTC
AGCAGCTGAAAAGCTCGTTGCGACGACAACGCCAGGGCGGGAATTCCAGC
GACGATTCCAGCGGCAAAGAGGACAAGGACGGCGAAGATGCTGAGAAAGC
AAGAAGAGAAAGGCAGGACAGGACGCCGATGGAGCGATGAATCCGACGAC
GACGATGACGATGAGAGACGATGATGAGAGACGAGAAGAGCAGAGACTTC
GCCTGGTAAAAACCGCACCAGTCGGCCACCACCGAGACAGATGGAGGCCG
AAGTTACGATGATGACACGATGATGATGATGAGCACGGTGATGGCGATGA
CAATGATTAACAGGACCTAATGATCCGATCCCAGAGCGCCAAGCCCGAAT
GACGCCTCCGAGACAGAGAAGTCCAGGTGAATGCCACGGTAGACCGATTG
TGCAATCGGAAAAGCCAGTCTCTCTGGCTCGAGAGACTCGTGTAGAAGAA
GGAAGAGCAGAT
FMO05741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8108-RA | 3160 | CG8108-RA | 206..1371 | 35..1181 | 5065 | 96.8 | Plus |
| CG8108-RB | 3138 | CG8108-RB | 184..1349 | 35..1181 | 5065 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9867305..9867744 | 374..813 | 2170 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9865099..9865399 | 35..335 | 1505 | 100 | Plus |
| 3L | 28110227 | 3L | 9868252..9868619 | 812..1161 | 745 | 90.2 | Plus |
| 3L | 28110227 | 3L | 9866310..9866362 | 331..383 | 250 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 22:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2884 | 111..254 | 156 | 59.7 | Plus |
FMO05741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:46 Download gff for
FMO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RB | 184..1349 | 35..1181 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:05 Download gff for
FMO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RA | 239..1404 | 35..1181 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:31 Download gff for
FMO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RB | 184..1349 | 35..1181 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:31 Download gff for
FMO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9865099..9865398 | 35..334 | 100 | -> | Plus |
| 3L | 9866314..9866361 | 335..382 | 100 | -> | Plus |
| 3L | 9867314..9867744 | 383..813 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:46 Download gff for
FMO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9858199..9858498 | 35..334 | 100 | -> | Plus |
| arm_3L | 9859414..9859461 | 335..382 | 100 | -> | Plus |
| arm_3L | 9860414..9860844 | 383..813 | 100 | -> | Plus |
