FMO05742.5prime Sequence
1271 bp (1058 high quality bases) assembled on 2008-09-02
> FMO05742.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTTACCGGCTG
AAGAGGAGGATTTGGCGGACACTGTCGCCAAGTACGATTCCATCGAATTG
AAGAGCATACAGGACCTGGAAACCTGCGAGCAGCAACAACTACTGCAGTA
CGTCGAAAAGCTGCACGGGATTATCCGCAAATACGACACCAAACTGGCGT
CCTATAAACAAAAACTCCTACACTACGTAAGCCGGGAAGAAAAGGTTTCG
TGTGACAAAGCCAGCCAAGCAACTGAATCGGAATTACAAGAATGCCAGTA
TTCCATGGAAAACGATGAGGATACTAACAAAAAAGACCAGCCCAACGATT
TATCGGCGACGGACGCCTTCAGTTTTGTGGACGAAATGAGGCAGGCAGCC
AAGCACGCCGAAAACCTGAACAACTTCGTTTACGAGCACACCTCTGGCAT
GTACTACGATCCCAAGACGGGATACTACTATAACGCGGAGTACGGGCTGT
ACTACGATGGTAACAACGGCTGCTACTACAGCTATGATCACGCCAAAGAC
TCGTACGAGTTCCACTCTCAGGCCCAGGTACAGGCGAACGATGCGGCCAA
ACCGGAATCGGAGGACGAGGATTTGGAGGTGCAGTTCGATGAGCTGGGAG
GCGTCATTACGGACCACGAAACGCTGAAGAAGATTAAGGCCGAGAAGCAA
AAGGCCAAAGATCAAGCTGAAAAATCCAAGCGCAAAGCCAAGAAAAAGAA
GAGTAAAAAGCACAGCAAGAAGAGATCCAAGAAGGAGCGCCGTCACAAGT
CCAAGAAGCGTCACAGGCATTCTGATGATGAGCGGTCTAATGATGCCGAG
GAGGGCGAGCTGTCGCAAAGCAGCGACTCCAGTTCCGACTCTAGCAACGA
GGATAGCAGCAGCAACACGGAAGACAGCAGTGTTCCAGTTTCAAGGCTGC
CGGACGCTTTCAAGACATTGCTAAAAGTATCCACCCTCCCTCCGCATCAT
TGTCCAGGAGACTAACGTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAA
TCCCATACAAGGTGGATCCTCTTGGACGGAGGGCGCCTCCGATGTTTATC
ATCGGACGGGAACGTCAGCAATGTGCCACTAAGGTTAAGTATGAAAACAG
TTGGGAACCAACATGTCTTGATCTGGTTCCGGAAACGTACATTTCATGAA
TCATGTCACGCGACCCATGAATCTGTTCCACGGACGAGGTTTACCCCTGT
GCCCCACGGCTCTACGTTGTC
FMO05742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RA | 2156 | CG8079-RA | 84..1245 | 35..1187 | 5315 | 97.9 | Plus |
CG8079-RB | 2218 | CG8079-RB | 84..1239 | 35..1187 | 5215 | 97.3 | Plus |
CG8079-RE | 2096 | CG8079-RE | 86..634 | 35..583 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15222041..15222425 | 581..964 | 1875 | 99.7 | Plus |
2R | 25286936 | 2R | 15218464..15218657 | 35..228 | 970 | 100 | Plus |
2R | 25286936 | 2R | 15221429..15221566 | 351..488 | 690 | 100 | Plus |
2R | 25286936 | 2R | 15218713..15218836 | 227..350 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15221727..15221824 | 487..584 | 490 | 100 | Plus |
2R | 25286936 | 2R | 15222495..15222715 | 963..1176 | 445 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:44 has no hits.
FMO05742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for
FMO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1253 | 35..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:06 Download gff for
FMO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1253 | 35..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:37 Download gff for
FMO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1253 | 35..1193 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:37 Download gff for
FMO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15222044..15222425 | 584..964 | 99 | -> | Plus |
2R | 15218464..15218655 | 35..226 | 100 | -> | Plus |
2R | 15218713..15218836 | 227..350 | 100 | -> | Plus |
2R | 15221429..15221565 | 351..487 | 100 | -> | Plus |
2R | 15221728..15221823 | 488..583 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for
FMO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11105969..11106160 | 35..226 | 100 | -> | Plus |
arm_2R | 11106218..11106341 | 227..350 | 100 | -> | Plus |
arm_2R | 11108934..11109070 | 351..487 | 100 | -> | Plus |
arm_2R | 11109233..11109328 | 488..583 | 100 | -> | Plus |
arm_2R | 11109549..11109930 | 584..964 | 99 | -> | Plus |