Clone FMO05742 Report

Search the DGRC for FMO05742

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:57
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8079-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05742.5prime Sequence

1271 bp (1058 high quality bases) assembled on 2008-09-02

> FMO05742.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTTACCGGCTG
AAGAGGAGGATTTGGCGGACACTGTCGCCAAGTACGATTCCATCGAATTG
AAGAGCATACAGGACCTGGAAACCTGCGAGCAGCAACAACTACTGCAGTA
CGTCGAAAAGCTGCACGGGATTATCCGCAAATACGACACCAAACTGGCGT
CCTATAAACAAAAACTCCTACACTACGTAAGCCGGGAAGAAAAGGTTTCG
TGTGACAAAGCCAGCCAAGCAACTGAATCGGAATTACAAGAATGCCAGTA
TTCCATGGAAAACGATGAGGATACTAACAAAAAAGACCAGCCCAACGATT
TATCGGCGACGGACGCCTTCAGTTTTGTGGACGAAATGAGGCAGGCAGCC
AAGCACGCCGAAAACCTGAACAACTTCGTTTACGAGCACACCTCTGGCAT
GTACTACGATCCCAAGACGGGATACTACTATAACGCGGAGTACGGGCTGT
ACTACGATGGTAACAACGGCTGCTACTACAGCTATGATCACGCCAAAGAC
TCGTACGAGTTCCACTCTCAGGCCCAGGTACAGGCGAACGATGCGGCCAA
ACCGGAATCGGAGGACGAGGATTTGGAGGTGCAGTTCGATGAGCTGGGAG
GCGTCATTACGGACCACGAAACGCTGAAGAAGATTAAGGCCGAGAAGCAA
AAGGCCAAAGATCAAGCTGAAAAATCCAAGCGCAAAGCCAAGAAAAAGAA
GAGTAAAAAGCACAGCAAGAAGAGATCCAAGAAGGAGCGCCGTCACAAGT
CCAAGAAGCGTCACAGGCATTCTGATGATGAGCGGTCTAATGATGCCGAG
GAGGGCGAGCTGTCGCAAAGCAGCGACTCCAGTTCCGACTCTAGCAACGA
GGATAGCAGCAGCAACACGGAAGACAGCAGTGTTCCAGTTTCAAGGCTGC
CGGACGCTTTCAAGACATTGCTAAAAGTATCCACCCTCCCTCCGCATCAT
TGTCCAGGAGACTAACGTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAA
TCCCATACAAGGTGGATCCTCTTGGACGGAGGGCGCCTCCGATGTTTATC
ATCGGACGGGAACGTCAGCAATGTGCCACTAAGGTTAAGTATGAAAACAG
TTGGGAACCAACATGTCTTGATCTGGTTCCGGAAACGTACATTTCATGAA
TCATGTCACGCGACCCATGAATCTGTTCCACGGACGAGGTTTACCCCTGT
GCCCCACGGCTCTACGTTGTC

FMO05742.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..1245 35..1187 5315 97.9 Plus
CG8079-RB 2218 CG8079-RB 84..1239 35..1187 5215 97.3 Plus
CG8079-RE 2096 CG8079-RE 86..634 35..583 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222041..15222425 581..964 1875 99.7 Plus
2R 25286936 2R 15218464..15218657 35..228 970 100 Plus
2R 25286936 2R 15221429..15221566 351..488 690 100 Plus
2R 25286936 2R 15218713..15218836 227..350 620 100 Plus
2R 25286936 2R 15221727..15221824 487..584 490 100 Plus
2R 25286936 2R 15222495..15222715 963..1176 445 88.3 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:44 has no hits.

FMO05742.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for FMO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1253 35..1193 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:06 Download gff for FMO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1253 35..1193 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:37 Download gff for FMO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1253 35..1193 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:37 Download gff for FMO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15222044..15222425 584..964 99 -> Plus
2R 15218464..15218655 35..226 100 -> Plus
2R 15218713..15218836 227..350 100 -> Plus
2R 15221429..15221565 351..487 100 -> Plus
2R 15221728..15221823 488..583 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for FMO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 35..226 100 -> Plus
arm_2R 11106218..11106341 227..350 100 -> Plus
arm_2R 11108934..11109070 351..487 100 -> Plus
arm_2R 11109233..11109328 488..583 100 -> Plus
arm_2R 11109549..11109930 584..964 99 -> Plus