FMO05744.5prime Sequence
1247 bp (1081 high quality bases) assembled on 2008-09-02
> FMO05744.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCTTTTTC
GCAAACCGAAGAAAATTCAGCGACGCGTGTTCTCCAGCAACGCTGACGAA
GAGGAGGACGGCGCATCCTTGGATCCGGACGCCGAAATGGAGGCGCCACC
GCCTCCCATAATTTCGGGCAAGAGGGAGAAAGAGAAGAGCCGGAAGGCCA
TAAAGCCGCAGGAGGACAACAGCAAGCCAAAGGCGCTGCTCAGCTTCGCA
GATGATGAGGATGACGGCGAGGTGTTCCAGGTGCGAAAGTCGTCGCATAG
CAAGAAAGTGATGCGCATGCTGGACAAGGAACGCCGCAAGAAGAAGCGCG
AGGAACGGGCGGAAAACAGCGGACATCCCGGGGGCGAAAATGGTAGTACA
CAGCATTTAGAGTCGTCCGGTGGCCCATCATCGGGTCCCCCGAATTCCAA
CTCGAATCCTGCCAATGCTGGCAGATATAAAAGTGCCAGCGATCAGAGTA
AAAGTAAAAAAAGTGATAATCATATGATCCAAACCGAAATACGCACAGAC
GACTTTGTGCTAGTGGTAAAGAAATCTGAGACTCCCGAGGCAATTCTGAA
CGGTAGAGCTGCCCTTTGCGCTGGACGGGAGGATATGAGCGATGAAGAAG
ACCAGCAATCCGAGGATGGTGGCCATGACAAAACGCGTCACCGTTTCTCC
AAGCCAGAACATTTGAAACAGATGCTCGAAAGTGGTTCCATTCCGGATGC
AGCAATGATACACGCTGCCCGAAAACGTCGGCAAAGGGCTAGAGAACAGG
GTGCAGGCGACTATATACCTATTGAGGAGCCCAAGGAGCCGGCCAAGCTA
AGCAACCGTCTGCCCTGCGAAGATGTTGAGGGTGATCAGTCGGATGATGA
AGAACGCATGGACATGAACGATATTACGGGACGCAAAGAGCGTGAAGAGC
GGCGCGAGCAATTTTATGCTGTCGAAATGATTCCACCGACGGAGATTCAG
ATCGCGGAGATGAACGGGTGGGAAAACCAGCAGATCCGCAAGGGTGTTAC
GCAGCCCAGTTGGTCAATCTCAGCATGAAACAGTGCTCTCCGTTATGATC
AGCCTGCCCCGTCGGCATCGGACGCATGGACGACGGAAATCACACGGCCC
AGTCAGTCCACTCTGCTGGAACGGCTATGCTAAATGCCTTGAGCCCACTA
CGCACAGTTCGAATTCGTCAACCAAAGGAAAGCAGGCAACGCATTGC
FMO05744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1965-RA | 3127 | CG1965-RA | 110..1290 | 38..1198 | 5300 | 97.6 | Plus |
| CG1965-RC | 3132 | CG1965-RC | 110..1295 | 38..1198 | 5240 | 97.2 | Plus |
| CG1965-RB | 3223 | CG1965-RB | 110..1055 | 38..982 | 4705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7067787..7068089 | 257..559 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 7068707..7068950 | 559..802 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 7067510..7067729 | 38..257 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 7069005..7069182 | 800..977 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 7069285..7069394 | 983..1091 | 375 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:14:34 has no hits.
FMO05744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:36 Download gff for
FMO05744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1965-RA | 100..1279 | 28..1188 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:08 Download gff for
FMO05744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1965-RA | 77..1256 | 28..1188 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:26 Download gff for
FMO05744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1965-RA | 100..1279 | 28..1188 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:26 Download gff for
FMO05744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7067500..7067729 | 28..257 | 98 | -> | Plus |
| 3R | 7067788..7068089 | 258..559 | 100 | -> | Plus |
| 3R | 7068708..7068948 | 560..800 | 100 | -> | Plus |
| 3R | 7069006..7069188 | 801..982 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:36 Download gff for
FMO05744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2893222..2893451 | 28..257 | 98 | -> | Plus |
| arm_3R | 2893510..2893811 | 258..559 | 100 | -> | Plus |
| arm_3R | 2894430..2894670 | 560..800 | 100 | -> | Plus |
| arm_3R | 2894728..2894910 | 801..982 | 99 | -> | Plus |
