FMO05747.5prime Sequence
1065 bp (981 high quality bases) assembled on 2008-09-02
> FMO05747.5prime
ACCTTATACGAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACT
ATGGCAGCCAGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGC
CTGTCGCACGGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGA
CCTCATCGATCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGC
GCAACCAGGAGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTG
GAGTTCAAGCTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCG
ATTTTTGCGCGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTG
ACGGGGAAGCCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCC
AGCGAACCGCAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGT
CGAGCAAGTTGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGG
CAACTGCTGCCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCA
CTCTTATCTTCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAA
GGCCAAGCAGATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACTCGG
CCTCCTACTCAACGAAATCCCTTACCCAGGAAAAAGACACTTCGCGACTT
CTTGACACGGACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTTAAT
TCACGTCTACGACGACGAGTTCCGGCGGACCCTGCCCAGAGTTTTGCGCT
CTATAAGAAGTATCAGATATCGATACATAATGATCCGCCCAAGGATCAGG
ACGCGTACAAGGAGCATCTGCAGGCGACTCCCCTAACAGAATGAGAACCC
TGGGATGGTCCCGAAATGGCTACGTTCGTTCATCAGCAGTACTTGGCTGG
ACGACAAGTTGATTGCCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTA
AGCTCGGTGTACTTTTTCTACGAATCCGGACTTATAGCTTTTATCCGCTT
GGCACATATGGTTCC
FMO05747.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 109..1148 | 26..1064 | 4890 | 98.7 | Plus |
| Ate1-RA | 1622 | CG9204-RA | 109..1127 | 26..1064 | 4565 | 96.7 | Plus |
| Ate1-RD | 1646 | CG9204-RD | 109..822 | 26..739 | 3525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 545..110 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256629 | 744..546 | 885 | 98.5 | Minus |
| 2R | 25286936 | 2R | 20255889..20256037 | 885..738 | 680 | 98.7 | Minus |
| 2R | 25286936 | 2R | 20255634..20255802 | 1064..896 | 515 | 94.8 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 112..26 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:25 has no hits.
FMO05747.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:30 Download gff for
FMO05747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1148 | 26..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:56 Download gff for
FMO05747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 100..1139 | 26..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:20 Download gff for
FMO05747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RB | 109..1148 | 26..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:20 Download gff for
FMO05747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255886..20256035 | 740..889 | 98 | <- | Minus |
| 2R | 20256436..20256629 | 546..739 | 98 | <- | Minus |
| 2R | 20255632..20255809 | 890..1065 | 94 | <- | Minus |
| 2R | 20256690..20257124 | 111..545 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 26..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:30 Download gff for
FMO05747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143137..16143314 | 890..1065 | 94 | <- | Minus |
| arm_2R | 16143391..16143540 | 740..889 | 98 | <- | Minus |
| arm_2R | 16143941..16144134 | 546..739 | 98 | <- | Minus |
| arm_2R | 16144195..16144629 | 111..545 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 26..110 | 100 | | Minus |
