FMO05748.5prime Sequence
1213 bp (924 high quality bases) assembled on 2008-09-02
> FMO05748.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCCGTTTTCTAA
GCCGTCGCAAGGGGCGCAACAACTATGTGGATAATTCGAGAGAGGGCGGC
GGGGCAACTAGTTCCGCGGTGGGCGTGGCTGGGGGTGGTGGTGCCATCAC
CTCCGGCGGCAGCTCACAAATAAAGCCACAACGCATCGTGGTCAACAAGA
ACAAAATCGACTGCCGCGTCATTCTGCTGGACAACACTGACCTTTCCATC
GAATTATCGAAAAAGGCATTGGGCAGCTTTTTGTACGAACAGGTATTCTA
CGCACTGGACATCATCGAGAAGGATTACTTTGGGCTGCAGTTCATGGATG
CCAATCACGTCAAGCACTGGCTAGATCCCACCAAGCCCATCAAGAAGCAG
GTCAAAATTGGGCCGCCCTACACGTTCCGGCTGAAGGTGAAGTTTTACTC
TTCGGAACCCAATACACTGCGCGAAGAGCTGACCCGCTACCTGTTCTTCT
TGCAACTGAAACAAGATCTTCTCGAGGGGCGACTCGACTGTCCGGAGGAC
AAGGCCACCGAACTCTGTGCTTTGGCATTGCAGTCTGAACTGGGCGACTA
TGACAATCAGGAGCATTCCGCCGCCACCGTCTCGGAGTTCCGTTTTGTGC
CCGAGCAAACGGAGGACCTGGAGATAGCCATACTAGACGAGTACAAGACG
TGCCGTGGTCTCACACCTGCTCAAGCAAAAACGGCATTCCCTGAACAAGG
CCAAGTGGCTGGATATGTACGGTGTTGACATGCACACGGTGCTCGGAAAG
GATGGCTGCAATTACCACCTTGGGCCTTACGCCCACCGGAAACTTGTTTT
CGAACGCGATCAGAAGATCCGGCTGTTCTTCTGGCCAAGATCAGTAAGCT
GGATTTCAGAAAAAGAAATTGACTCTTTATTGTGATCGAGATGACGACGA
GGGAAGAGAGCAGGAAAACACCTTAGTCTTCCGGCTGACAACGAGAGGCG
TGCAACACCTGTGAAATGCCCCGGGAACACCCCACCCTTCTCCGGCTAAG
TGCGCGGTCAAGGGCCCCTCCGCACGACAAAACATCCTTCCGTATGGATC
CTCAGCTCAGTATCCGGTCGACCGATTCAAAACACCCGACAAAGCTCGAG
CCAGAAAACCGTCCAATTGAGAAAAAGCACCTCTCGAGAAAATTTGTAAT
CCGTGTCTGCGCA
FMO05748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yrt-RD | 4464 | CG9764-RD | 713..1781 | 35..1097 | 4685 | 96.7 | Plus |
| yrt-RC | 3811 | CG9764-RC | 713..1781 | 35..1097 | 4685 | 96.7 | Plus |
| yrt-RB | 4249 | CG9764-RB | 713..1781 | 35..1097 | 4685 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13432415..13432933 | 1097..585 | 1600 | 93.3 | Minus |
| 3R | 32079331 | 3R | 13434048..13434272 | 259..35 | 1110 | 99.6 | Minus |
| 3R | 32079331 | 3R | 13433065..13433241 | 584..408 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 13433307..13433455 | 407..259 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:07 has no hits.
FMO05748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:43 Download gff for
FMO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RB | 704..1779 | 27..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:35:58 Download gff for
FMO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RC | 704..1779 | 27..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:26 Download gff for
FMO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RB | 706..1781 | 27..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:26 Download gff for
FMO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13433307..13433454 | 260..407 | 100 | <- | Minus |
| 3R | 13434048..13434279 | 27..259 | 97 | | Minus |
| 3R | 13432415..13432933 | 585..1097 | 93 | <- | Minus |
| 3R | 13433065..13433241 | 408..584 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:43 Download gff for
FMO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9258137..9258655 | 585..1097 | 93 | <- | Minus |
| arm_3R | 9258787..9258963 | 408..584 | 100 | <- | Minus |
| arm_3R | 9259029..9259176 | 260..407 | 100 | <- | Minus |
| arm_3R | 9259770..9260001 | 27..259 | 97 | | Minus |
