FMO05749.5prime Sequence
869 bp (592 high quality bases) assembled on 2008-09-02
> FMO05749.5prime
TTCGTATAGCATACACCTATACGAAGTTATCAGTCGACATGGAGAGCAGG
ACCCAAATGAATCAGTCGAACCAGCAACAGCAGCAGCAGAGGAATCGCCT
GCCCTCCTCGCCAAGTCCACCGCTGAGTGTGGTCAGTCTCACTGGCGGTC
CGAATGCCAACACAACCTTGATGGGCCTTGAGCACGATGCAGTGCCCTCG
TCGCAGCTGGGCAGGAACAACAACAACGGAGGTGGCCACCATCGGAGTCA
CAGCATTACCAATGCAGCGACCACATCACTGGCGAATCTTCTGGACGGAT
TTACAGCGCGCGTCTCCACAGCGGCAGCTGCTGCGGCGGCCACGGCTACA
ACCACAGAGGTGGTGGTGGCGGCCGCCTCTGTGATCACCAACCACCTCAG
CTCACCCACCAGCGGCACTCCGCCCCACGGCCTGTATGTAGATGAGGGCG
ACGACGAGTGCGACGACTGTGAGGAGGACGAAGACGATCCGGTGGACAAC
GATGGACACATTGCCGCCCCCACGCCGAACAAAGCTGGGCCGAGAACAAG
CAAGTGTGCAGGAGATATACAACAAAAAGAGAAGCCTGTCTCCTTGTTGC
CCACCATGTGCAGTTCCGCCACTTGTCAGATGACGTGCCAGGTGCTACTT
CCTCGGCAACTCCGCCGCAAAGCTTGGAGACTACGCTGCTCTTTGGCCGA
CTTTACCTACGCATCGAAGACACATTTTTTGTGCACCGATTGGAGGCATG
CCTCGATGATGAATCCCACTGGATGCAGATCCCCATACCAACGACCAGGT
CTTTTTATTCTGTCTGTCATACTCAGGGATCCATATGCGCACACTTACAA
ATTGGGGACTGAGCGTGTA
FMO05749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-RF | 4543 | CG3744-RF | 664..1334 | 38..705 | 2995 | 97 | Plus |
| CG3744-RE | 3699 | CG3744-RE | 417..1087 | 38..705 | 2995 | 97 | Plus |
| CG3744-RG | 4476 | CG3744-RG | 882..1267 | 323..705 | 1570 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24875705..24875991 | 324..38 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 24875150..24875526 | 695..323 | 1410 | 95.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1037..1106 | 32..102 | 109 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1113 | 45..88 | 109 | 75 | Plus |
FMO05749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:55 Download gff for
FMO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 412..1101 | 34..716 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:15 Download gff for
FMO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RA | 649..1338 | 34..716 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:46 Download gff for
FMO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 412..1101 | 34..716 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:46 Download gff for
FMO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24875127..24875525 | 324..716 | 94 | <- | Minus |
| 3R | 24875706..24875999 | 32..323 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:55 Download gff for
FMO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20700849..20701247 | 324..716 | 94 | <- | Minus |
| arm_3R | 20701428..20701721 | 32..323 | 98 | <- | Minus |
