FMO05750.5prime Sequence
914 bp (798 high quality bases) assembled on 2008-09-02
> FMO05750.5prime
ATAGCATACCTTAAACGAAGTTATCAGTCGACATGGCGCGTTGGTGGCCA
ATTTTGAGCGTTGTGTGCCTCTGCCTTGCTGTTGCACATGGCCAGGACAA
GCTGGAGGGCGTTGATGTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATG
AGTACTTCCGCCTGGAGACCGACGGCGACTGCCGCGAGGTGTACAGATGT
ACCAAGTCGGGTTTGAAAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGA
CGTGATCAAGCAGACCTGCGACTGGAAGGCCAAGGTGACCAATTGCGACG
AGAAAGAGAAGCCGCGCAAGGCCAAGCCCATCCTGAAGACGGATGAGCCC
ATCTGTCCCGAGGGTAAGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAA
GGAGCTCTTCTGCAACGGCAAGTCCGACTGCAAGGACGAATCCGATGAGA
ACGCCTGCTCTGTCGATGAGGATCCCAACCGCGCCCCCGAATGCGATCCG
ACGCAGTGCGCCCTGCCCGACTGCTTCTGCTCGGCGGACGGAACCCGCAT
TCCCGGCGGCATTGAGCCCCAACAGGTGCCCCAGATGATCACGATCACCT
TCACGGCGCCGTCAACGTGGACAACATCGACCTGTACGAGGACATCTTTC
AACGGACAGCGCCAGAATCCCAACGGCTGCTCCATCAAGGGCACCTTCTT
CGTGTCCCACAAAGTACACCAACTACTCGGCGGGTGCAGGACCCTTCATC
GTCGCGGACACGAGATCTCCGTGTTCTCGCTAACGCACAAGATGACCCCA
ATACTGGACCGGCGGGCAGCACTACGACTGGCTGGCCGAGATGGCCGGCT
CCCGACTGATCGTGAAGCGCTCCCAACATTCACCGACGGCTCCATCATCG
GCATTGCGGGCGCT
FMO05750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 2165 | CG8756-RG | 114..994 | 32..913 | 4085 | 98.3 | Plus |
| verm-RI | 2255 | CG8756-RI | 478..1084 | 306..913 | 2715 | 97.6 | Plus |
| verm-RH | 2183 | CG8756-RH | 406..1012 | 306..913 | 2715 | 97.6 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..350 | 85..196 | 560 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 32..84 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19691212..19691656 | 904..460 | 1665 | 96 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 459..310 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692265..19692379 | 309..195 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19692983..19693095 | 196..84 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 19702229..19702487 | 733..471 | 340 | 78.8 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 84..32 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:57 has no hits.
FMO05750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:14 Download gff for
FMO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 112..997 | 28..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:16 Download gff for
FMO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LCBP1-RD | 74..959 | 28..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:01 Download gff for
FMO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 109..994 | 28..914 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:01 Download gff for
FMO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19691203..19691656 | 460..914 | 96 | <- | Minus |
| 3L | 19691809..19691958 | 310..459 | 100 | <- | Minus |
| 3L | 19692265..19692377 | 197..309 | 100 | <- | Minus |
| 3L | 19692983..19693094 | 85..196 | 100 | <- | Minus |
| 3L | 19694973..19695030 | 28..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:14 Download gff for
FMO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19684303..19684756 | 460..914 | 96 | <- | Minus |
| arm_3L | 19684909..19685058 | 310..459 | 100 | <- | Minus |
| arm_3L | 19685365..19685477 | 197..309 | 100 | <- | Minus |
| arm_3L | 19686083..19686194 | 85..196 | 100 | <- | Minus |
| arm_3L | 19688073..19688130 | 28..84 | 96 | | Minus |
