FMO05751.5prime Sequence
1284 bp (1033 high quality bases) assembled on 2008-09-02
> FMO05751.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACACGTTGAGC
GAGGCAGTGGCCAATGGAACCGCGACTGCGGCCACCAGGACGACCAAGGA
CATTGTCAAGGAGCGCTTCAAGGAGGACGAGACCATAGAATACATATTCG
AGGCGTATCAGATCAAAGGACCAGAGTACTCCAACCGTCTTCTGGCCCTG
GTTTCATCGCAGTCGGGCGGCACGTTTGCCATCATCGCGTTCTCCTACTT
GCGCACTCCATTGTCCTCCGCGAACGAGCTGATCATCAACAAGGTGTTCG
CAATCGACCACAATTTCCAGTTGCGACAGGACAGCAAGAGCTCGATCACC
ACGCAACAGTTTGACCTGTCCACAGCCGAGGATGGCCCCATCAAGTACTA
CTACTACGCCACGGAGAGCCACCACTACGAGGAGTTTGTGGCCAAGGTGA
TTTCCTTCAAGAGCACCATGGCGCAGCATGATCCCGAGACGGTGCTTAAC
TTCAGGTGGCTGAATGACTACCGGCAAATCGGAGAAGTGAAGCAGGAGCT
GAAGAAGCGGGAGAGCGAGTACATTGTCTACAAGGACATAATCATCTACT
GCGCCACTTGGAATGTGAACAACAAGACCTGCAGCGACAGCAACAATCCA
CTGCGAGCCTGGCTGGCTTGCAGTGAGAAGCCGCCGGATATCTACGCGAT
TGGACTGCAGGAGCTAGATACTCCCACAAAGGCTATGTTGAACTCCACCC
AGGTGCACGCCATCGAGAAGCAATGGATCGATAAGATGATGGACAGCGTC
CACCCTGACGTAGAGTACGAAATCCTGATGTCGCACCGCCTGTGGCCACC
ATGCTGACGGTCATCGTGCGCAAGCAGCTGCGGCAGCACATCATACGCTG
CCGACCAAAGTCGTGGCCCGCGGCATCTTCAATACGCTAGGCAACAGGCG
GTGTCGCCATTAGCCTGCAGCTCAACGAGGGCAACATCTTGCTTTGTGAC
TCCCACCTGGCCGCCCACATGGGCTACGTTGGAGGAGCGAATCAGGACTA
CACCGCTATCGGTGGAAGGCCATACCCCTTCGGATGATGCCGAACAATCA
TGAACATGATCACATCTTCCTGGGTCGGCGATTGGAATTACGCGAATCAG
AGCGCCCCCCGCCAACCGGACAGAACACTTGAGGCGATGTCCCGAACATC
AGTGTTCATTGGATGACACAGCCTACTAAGGGAGTAGCCGCGTGTAAAGT
GTCCTTTGGTAGATGAGGACTCTACACCTCACGA
FMO05751.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ocrl-RB | 3619 | CG3573-RB | 709..1815 | 36..1141 | 5115 | 98.1 | Plus |
| Ocrl-RA | 3688 | CG3573-RA | 778..1884 | 36..1141 | 5115 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1924527..1924789 | 330..592 | 1315 | 100 | Plus |
| X | 23542271 | X | 1925103..1925389 | 779..1061 | 1065 | 96.9 | Plus |
| X | 23542271 | X | 1924095..1924285 | 140..330 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1924851..1925036 | 593..778 | 915 | 99.5 | Plus |
| X | 23542271 | X | 1923758..1923865 | 36..143 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:44 has no hits.
FMO05751.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:11 Download gff for
FMO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocrl-RA | 772..1902 | 29..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:17 Download gff for
FMO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3573-RA | 748..1878 | 29..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:34 Download gff for
FMO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocrl-RA | 772..1902 | 29..1157 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:34 Download gff for
FMO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1924528..1924789 | 331..592 | 100 | -> | Plus |
| X | 1924851..1925036 | 593..778 | 99 | -> | Plus |
| X | 1925103..1925435 | 779..1109 | 94 | -> | Plus |
| X | 1923752..1923865 | 29..143 | 97 | -> | Plus |
| X | 1924099..1924285 | 144..330 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:11 Download gff for
FMO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1818132..1818318 | 144..330 | 100 | -> | Plus |
| arm_X | 1818561..1818822 | 331..592 | 100 | -> | Plus |
| arm_X | 1817785..1817898 | 29..143 | 97 | -> | Plus |
| arm_X | 1818884..1819069 | 593..778 | 99 | -> | Plus |
| arm_X | 1819136..1819468 | 779..1109 | 94 | -> | Plus |
