FMO05752.5prime Sequence
1263 bp (1043 high quality bases) assembled on 2008-09-02
> FMO05752.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCAATTCGTC
TGGCAGCGAGGATGGCCAGTTGCGGAGCCCCAACGATGTGCACTATCACA
GCCGAGGCGAGGAGGATGAGCACGAGGGCGACGCTGATGCCTTGTACATT
CAACCACCGCAGGCCAGCCGAGAATCAGGATCCGGTCCCAGGCGCGAGAA
GAAGAAACATTCCCGCGAGCGTCGACGCCACAAGGAGCGTGATGACGTAG
GCGGTGCTGCACTAGCACTAGAACGGGATCATCGATATGACTATCGGAGC
CGGGAGGAGCACTACCACCACCACCAACGCGAACGGAGCAGCAATGCGGC
TGCAGCCTATGCGAAACACCACCTGGGCCATGCCTACCATTACCCTCAGC
CGCCTCAACAGCAGCAACAGCCTCTACCGCCGGCGCCCAGCTATGCTGCC
CACCATTATCATCATCACCAGCATTTAAGTGGAGCTCGAGCTGCTCCCCG
CGAATACCATTCCTATCCATCGGGCTACCATTCGGGCAGTCGACACGGCG
ACTACCCAATGGAGGAGCCAACGCGACGCAGCAGTAAGTACGCGGAGAGC
AAGGATGCTGAGAGCCTGGAACAGGATCTGCGATCGAGGTTGCTGAAAAG
CGCCATAACTACGTTAAGGATTATGAAACGGAGGAGAACTATGAGCATCG
GGTCGAGAGAAGTGATCGCCGGGAGGGAGGACGCAAAGAGCGGGAGAGAA
CTGTGCGAAGTACCCACAAGCAAAACCGTCACGACCGAGTCATTGAGCTG
CTGGACAGTCCTGAGCAGGAGCACCACCATCAGCACCAGCACAAATCGCA
TCGCAGCAAGTGGCGCGAGGAGGTTGAGGTTATCAGACGAAAGGTGCCCG
AGGACTTGGAGCTGTTGGCTCGCAGGAAAACTTCTTGCCGCTGACGGGAA
AGCCGCCAGCGAAACAGACGGCTCGTGAGAACTGGAAGCCTCGGCGGGAG
TTGCTCCGCGAGCGAAACGAGCAAGTGATGCACTTAGTCCAACAACAGTG
GCTGCAGTGTACCGCAGGTCTGACAATTCATGTGGAGAAGGAGTCCAAGC
CGGTTCTATGGAGGATCCACCTTCAGAAGCGGCGGGAGAGTGATATCCAG
TTATCCGAAATGATACAATTAGGAAGCAGGAAGCGACTCTCCACAGAGTC
TGGACGAACGCAGAAGCCCACGGTCTGGAGCGAACGCTGTCTGCAGAGAG
AGCAGATATTTCA
FMO05752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pitslre-RC | 3296 | CG4268-RC | 214..1385 | 37..1189 | 5115 | 96.8 | Plus |
| Pitslre-RA | 3355 | CG4268-RA | 273..1444 | 37..1189 | 5115 | 96.8 | Plus |
| Pitslre-RG | 3939 | CG4268-RG | 1014..2122 | 100..1189 | 4800 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20773792..20774803 | 100..1103 | 4525 | 98.5 | Plus |
| 3L | 28110227 | 3L | 20771800..20771864 | 37..101 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6804 | 391..473 | 124 | 65.1 | Plus |
FMO05752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:18 Download gff for
FMO05752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pitslre-RA | 273..1317 | 37..1073 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:19 Download gff for
FMO05752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pitslre-RC | 176..1220 | 37..1073 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:11 Download gff for
FMO05752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pitslre-RA | 273..1317 | 37..1073 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:11 Download gff for
FMO05752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20771800..20771864 | 37..101 | 100 | -> | Plus |
| 3L | 20773794..20774843 | 102..1137 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:18 Download gff for
FMO05752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20764900..20764964 | 37..101 | 100 | -> | Plus |
| arm_3L | 20766894..20767943 | 102..1137 | 97 | == | Plus |
