FMO05753.5prime Sequence
1285 bp (1073 high quality bases) assembled on 2008-09-02
> FMO05753.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGAAGTGCCA
CAAGTGCGGCAAACCCGTTTACTTCGCGGAACGTAAACAATCGATCGGCT
ACGATTGGCATCCGGAATGTTTGCGCTGCGAGGAATGCGGCAAACGCTTA
AATCCCGGCCAGCATGCTGAGCACAAAAGTGTGCCCTACTGCCATGTGCC
CTGCTATGGCGCCCTGTTTGGACCCCAGTTGTTTGGCCACGGCACCCGGG
TGGAATCGCACAAAAGCTATGGGGTGAAGGGAGCCCAGAAGCCAACCGGA
GCTCAGGCCAATGGCCCGCCACTCCCACGTGATCACCTGGAGTCCAAACT
TAAGGTCTACAACCAATTCTACGACAACAAAAGCCTGGAGATACGTAGTC
GTGAGGTCAACAACCGGTTGGTGCTGGAAGGCGCGCTTAGAGTTTACTGG
GGCGTGCAGGGAGTGATTCATCTCAAGGAGGACGATGATCAGCGCATCTT
AGTGCGCAAAAGGAACTCTTGCCGTGTGTCCAAGGCTGCCAATGAAAGCA
GTTCGGATAAGGAAAACGAAGCTAGCGAATCGCTGGCTCCGCCCACCACC
ACCACAGCCGAGGTCGATCAACTATCCACGGATGTTTCCCTTTCCGAGAG
CATGACCTTCGACTCCTGTAGCCTGAACGAGATCTCCGAGTTGCCCACAA
CCCCAGAAGATGCCTCGGCCAACACCACAGCCAACAGCAAAGAGCAGACC
AATGGTAATGTGTGCAACGACGACGAGGATACGACCACGACGGACTCATC
TGGAACCCTGGTGGAGGCTCCTACTGCCAGCACAAGTTGTGTGTCCAGCA
CATTGCCTTCGAAGTTGGACCGTCTGGAAAAACTGGATTGGGACGACATA
GACGATCTGCTGCAGGTAGAGAGACGTCACAACGACAAGGATCGCATTTA
TGAAACTATGCCTGTCAAACTGCCGTCGTCGCAATCCTCCAGCGACAGTT
CGCCCAGCAAAACATCACAGAGACCACTACGACACCTGAATCAAGCTCGA
CTCAATCGGCATCAACAAAAAACAGCAGCACGGATAATTTAAGACCGCCA
CGGGATGTGACTGCCAACCCAATACGCGAAATACAACAACCGGGTTACAC
ATGGAAACCTCTCTGGATAACTTCGAACCTGGCGATGAGCCTACCTGAGC
ATTGATTCCAGGACCTTAGCATGTCACAAGAACATGATGGCCACTCTACG
ACAAGAGCACCTTACCATATACCACACTGTATGCT
FMO05753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-RA | 3473 | CG4656-RA | 394..1557 | 37..1195 | 5365 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23116116..23116772 | 1195..544 | 2710 | 95.6 | Minus |
| 3R | 32079331 | 3R | 23116820..23117016 | 549..353 | 970 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23117079..23117265 | 356..170 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 23117330..23117425 | 171..76 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 23117499..23117538 | 76..37 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:31 has no hits.
FMO05753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:59 Download gff for
FMO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 390..1557 | 29..1195 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:20 Download gff for
FMO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 410..1577 | 29..1195 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:48 Download gff for
FMO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 390..1557 | 29..1195 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:48 Download gff for
FMO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23116135..23116772 | 544..1176 | 96 | <- | Minus |
| 3R | 23116826..23117014 | 355..543 | 100 | <- | Minus |
| 3R | 23117081..23117263 | 172..354 | 100 | <- | Minus |
| 3R | 23117330..23117424 | 77..171 | 100 | <- | Minus |
| 3R | 23117499..23117542 | 29..76 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:59 Download gff for
FMO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18941857..18942494 | 544..1176 | 96 | <- | Minus |
| arm_3R | 18942548..18942736 | 355..543 | 100 | <- | Minus |
| arm_3R | 18942803..18942985 | 172..354 | 100 | <- | Minus |
| arm_3R | 18943052..18943146 | 77..171 | 100 | <- | Minus |
| arm_3R | 18943221..18943264 | 29..76 | 91 | | Minus |
