FMO05756.5prime Sequence
1240 bp (881 high quality bases) assembled on 2008-09-02
> FMO05756.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTCCCACTTCACGCAT
GCCTCCAGCAGCGACCTGGTCAACCTCAATGTGGGTGGTCAGCGCTTTTC
CACGTCGCGGCAAACGCTTACGTGGATCCCGGACACCTTCTTCACGGCTC
TTCTCAGCGGACGCATCTCGAGTCTCAGAGACGAGCACAATGCCATCTTT
ATTGATCGCGATCCGACGCTCTTCTCGATCATACTTAACTACTTAAGGAC
CAAGGACATCGACATCAAGAACTGCGAAATACGCGCTCTGCGCCATGAGG
CCGAGTACTATGGCATCACGCCGCTGACCAAGCGCCTGGCCCTCTGCGAA
GACCTTAACCACTCGTCCTGCGGTGATTTGCTGTTCTACGGATTTCTGGC
GGCGCCGCCCATGCCGTCAAACGAAGCTGTGGCTGCTACTAGCGTTGACA
AGTCATTGCCCTCCACTTCGGCCAGTGCGATTGGCAGTCGTCCTGGGTCC
ATGGTGCGCGTTCCCGAACCCTCACGCTCCTCACACTCGCGCAATTCATC
ATGGGATCTGCGCCTTGGTCGCACAGGTAGCACTGGCAATGGTGCCAATC
CCCCAGCTCCCATGTTGCACTCACGTAATCCCTCGATTGACTTTATGCGC
CACTCTCGGAACTCCTCGGCCGATCTGAACAAAGTCTTTCGAAACGAAGT
TGGCCTGGTATTCAGTCCCACGCAGAACTCAAACTGGGTGGACCCGTTGC
GAGTGCAAATCATTAAAGCGCACCAAAATTGGATAGCAGTGGCTTACGCA
CACTTTGTGACTTGCTACCGGGTGAAAGACTCCACGGATGGCAGCAGTGT
TCACATCGCCCCACATCGACGCCACTATCGAAGAATCGCCATCAACTCAA
TGTGAATACTTCCGCAGCAGAGCACTGCCCAGCAGATGGTGGCCATTTCT
TACGGCATTAGATAGATGTGAGCATCAGGAGGCGGCAGAAAACGGATGTG
GCCCGTTTATTTAATGTGCGAGTGGAGTACCTGTTCTTTTTCGCAGTCAG
CTGGGTGTCCAGTCATCTTCCCGCAGATCGCAACTGAAGCAATGACCCGC
ACTGCCAATTCCCGACCTATGCCCTGCCTTCCATCATCGCCAGCCTTTTG
GTGTGGGCTGTCACACGCTCTTACGATGACGTAAGTCCGCTTCGGAAAGA
CTGGTACCGGGTTCACGATCTCACGAAGGTGCAACCAGGC
FMO05756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 3180 | CG9467-RA | 296..1362 | 32..1080 | 4720 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9799593..9800591 | 1075..94 | 4020 | 96.3 | Minus |
| 3R | 32079331 | 3R | 9800669..9800731 | 94..32 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:50:46 has no hits.
FMO05756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:02 Download gff for
FMO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 286..1356 | 23..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:25 Download gff for
FMO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 311..1381 | 23..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:52 Download gff for
FMO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 286..1356 | 23..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:52 Download gff for
FMO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9799630..9800590 | 95..1039 | 97 | <- | Minus |
| 3R | 9800669..9800741 | 23..94 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:02 Download gff for
FMO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5625352..5626312 | 95..1039 | 97 | <- | Minus |
| arm_3R | 5626391..5626463 | 23..94 | 94 | | Minus |
