FMO05759.5prime Sequence
1219 bp (1025 high quality bases) assembled on 2008-09-02
> FMO05759.5prime
CATACATTATACGAAGTTATCAGTCGACATGGCGGGTAACATTGTCAAAT
GGTGGAAGCATAAAATTCTCGGCGGCTACAAACAATTCTCAGTCCAGGAA
TGCACCACAGACTCCGAGGAGCTGATGTACCACCAGGTGCGGGCCTCCTC
CTCCTGCAGCGCCCCGCCCGATTTGCTGCTGGTCAGCGAACGTGACAATA
ATATCCAACTGCGATCGCCGGTAGTGAACATAATCACCACGCCGCCGGGC
AATGCGTCTGGTGCGGGAAGTAAGCAGCAGTCTCATCACCAGACGAACCA
CCACTCCTCGGGCAGGAGTCATCCCGGGCACACGGCACATCCGCAGGATG
TGAGCAGCGGCGGCAGCCATAGCAAGCATCTGCGCATCAGCAGCACTTCC
AATGGCAAGCACGGCAAATACTCAAATATGCAGCAGCAACTGCCGCAGGA
TGAGGATGTGGTGGATGCGGCTGCCACGATGCAGCAGCAGCAGCACACTG
GCCACGCCCACTCGCGCCACCTGCACCACCACAAGGAGGAGCGCATCCGA
CTGGAGGAATTCACCTGCGACGTGTCCGTGGAGGGCGGCAAGTCATCGCA
GCCGCTGCAGTTCTCGTTCACGTTCTACGACCTGGACGGGCATCACGGCA
AGATAACAAAGGACGACATCGTGGGCATTGTGTACACCATATACGAGTCC
ATTGGCAAGTCGGTGGTGGTGCCCCACTGCGGCAGCAAGACAATCAACGT
GCGCCTCACCGTCAGTCCCGAGGGAAATCGAAATCGCAGCCGGTGGTGCC
CGTTCGGGTGGCAGCCGGATTAAGCAGCAGCCACGCCAGCAAACTGAAGA
AGTTGCCCACGGGGTCTGGCGGCCATGTCGAAACCCCTGGTCGGCGGAGG
AGTGGGATCCGGCGGAGCGTCGGCGCTAACGACATCCGCCGGCACCGCCG
CCAGCATCGCTATCGACCACGCTACTGATTAGTTCGATGACGAGGACGAT
GACAGCACAGCGAAAAGAGACGACGCGGCCACGCCCTGCCGCCGACAGCC
CAGCGGAAGTTGAACAAAGGCGACTGGGAAAACCATACCACCGATCGCAG
TCGCCAGGTATCACAAAAGAAACAATTCCGGGCGGGAACAGTCGCCGAAC
AGAATCCCCCGAAATGATCATACCTACGAGAATTGCGAATCCAAGTCTCT
GCCAGCCGGAAGATGTGAC
FMO05759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RC | 4685 | CG11614-RC | 1083..2287 | 29..1210 | 5020 | 95.9 | Plus |
| nkd-RB | 4674 | CG11614-RB | 1083..2287 | 29..1210 | 5020 | 95.9 | Plus |
| nkd-RA | 5051 | CG11614-RA | 1083..2287 | 29..1210 | 5020 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19010594..19011061 | 557..90 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 19007657..19008256 | 1142..555 | 2025 | 94.2 | Minus |
| 3L | 28110227 | 3L | 19044304..19044367 | 92..29 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10637..10813 | 319..496 | 183 | 61.7 | Plus |
FMO05759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:53 Download gff for
FMO05759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..2180 | 21..1114 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:39 Download gff for
FMO05759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 960..2062 | 21..1114 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:41 Download gff for
FMO05759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..2180 | 21..1114 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:41 Download gff for
FMO05759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19044304..19044372 | 21..92 | 95 | | Minus |
| 3L | 19007685..19008254 | 557..1114 | 95 | <- | Minus |
| 3L | 19010595..19011058 | 93..556 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:53 Download gff for
FMO05759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19000785..19001354 | 557..1114 | 95 | <- | Minus |
| arm_3L | 19003695..19004158 | 93..556 | 100 | <- | Minus |
| arm_3L | 19037404..19037472 | 21..92 | 95 | | Minus |
