FMO05760.5prime Sequence
1197 bp (1064 high quality bases) assembled on 2008-09-02
> FMO05760.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGCATTCCGCGATCCTGG
AGGACTCGCCCAACGCGCGCATCAACAAGACGATCCTCGATCGCTATCTT
TCACTGCCGCTGCAGGAGAACATCGTTCAGGCCACCTACGTGTGGATCGA
TGGCACCGGCGAGGATTTGCGCTGCAAGGATCGCACCCTCGACTTCATTC
CCCAGAGTCCCAAGGAGCTACCCGTTTGGAACTACGATGGAAGCTCGTGC
TACCAGGCCGAGGGATCCAACTCGGACACCTACCTGTATCCGGTGGCCAT
CTACAAGGACCCGTTCCGGCGCGGCAACAACATCCTGGTGATGTGCGACA
CCTACAAGTTCGACGGCACCCCCACGGACACCAACAAGCGCAAGACCTGC
CTGGAGGTGGCCAACAAGTGCGCCGCAGAGGAGCCCTGGTTCGGTATTGA
GCAGGAGTACACCTTCCTCGACTTTGATGGCCATCCATTGGGCTGGCCCA
AGAACGGTTTCCCCGGACCCCAGGGACCCTACTATTGCGGCGTTGGTGCC
AACAAGGTCTACGCCCGCGACATTGTGGATGCCCACTATCGCGCCTGTCT
GTACGCCGGCATCAAGGTGTCCGGCACCAATGCCGAGGTGATGCCCGCCC
AGTGGGAGTTCCAGGTGGGACCCTGCGAGGGCATCTCCATTGGTGATGAT
CTCTGGATGGCCCGTTTCCTCTTGCATCGCATCTCCGAGGAGTTTGGCAT
TGTGTCCACTCTGGATCCCAAGCCGATGCCTGGCGATTGGAACGGTGCTG
GTGCCCACACCAATGTGTCGACGAAGGCAATGCGCGAAGATGGCGGCATT
CGGGACATTGAGAAGGCGGTGGCCAAGCTGTCCAGTGCCACGAGAGGCAC
ATTCGCGCCTACGATCCCAAGCAGGACAGGACATGCCCGTCGTCTGACCG
GAAGCACGAGACGAGCTTCATCACGATTTCAGTGCCGGCGTGCAATCGCG
GATGCAGCATACGCATCCTCGCGGGCGTCATGATGATGGCAGGCCTATTT
CAGGATCGCGCCCCAGCTCACTGCGATCCTACTCCGTGTTGAGGCCATCT
TGCCACATCTGCTGGACGAGCAGCTTTCTAGAACAATTCGTTTGGCCGCG
GTCCAGGTAAGTGTCCTATCCTAATACTTATACCTAACTCATAAAGC
FMO05760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-RB | 1906 | CG1743-RB | 231..1336 | 32..1119 | 5010 | 97.9 | Plus |
| Gs2-RF | 1990 | CG1743-RF | 326..1420 | 43..1119 | 4955 | 97.9 | Plus |
| Gs2-RE | 1829 | CG1743-RE | 165..1259 | 43..1119 | 4955 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11428528..11428871 | 215..558 | 1720 | 100 | Plus |
| X | 23542271 | X | 11429239..11429539 | 749..1041 | 1050 | 95.3 | Plus |
| X | 23542271 | X | 11428980..11429173 | 555..748 | 970 | 100 | Plus |
| X | 23542271 | X | 11424282..11424454 | 43..215 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 132973..133207 | 429..663 | 380 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:28 has no hits.
FMO05760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:57 Download gff for
FMO05760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 224..1340 | 24..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:13 Download gff for
FMO05760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 201..1317 | 24..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:47 Download gff for
FMO05760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 224..1340 | 24..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:47 Download gff for
FMO05760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11424282..11424454 | 43..215 | 100 | -> | Plus |
| X | 11428529..11428869 | 216..556 | 100 | -> | Plus |
| X | 11428982..11429173 | 557..748 | 100 | -> | Plus |
| X | 11429239..11429631 | 749..1123 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:57 Download gff for
FMO05760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11318315..11318487 | 43..215 | 100 | -> | Plus |
| arm_X | 11322562..11322902 | 216..556 | 100 | -> | Plus |
| arm_X | 11323015..11323206 | 557..748 | 100 | -> | Plus |
| arm_X | 11323272..11323664 | 749..1123 | 93 | | Plus |
