FMO05761.5prime Sequence
1239 bp (1076 high quality bases) assembled on 2008-09-02
> FMO05761.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTACAACTAC
AACAACAGCTACAACTACAACTACATCTGCAGCACCACCAGCCCCAATAA
CAACAGAAGCAGAAACAACAAAAGCAGAGAACAGGACACGCAGCAGCAGC
AGCATCAGCAGCAGCATCAGCAGCCACATCAGCAACCAATGCAGGCGGCA
CTGAGGACGGCGAGCTTTAGCTCCAGCTCCAGCTCCAACGCCAGCAGCTC
CACGTCCACATCCAAGACGAGAGCAGGAATAACGTCGTTAATCTATTTAC
CGCCTTTCTGCTATCCATGTAAGCATGTGCCTGCGGCCGGCACCACGACT
CGGAGTCGAAGTCAGACTTTGAGCCCTGGCAGCGGGAGTTGCCGGGACAG
CAGCTGCTGTTGTCCGCCCGGCTGGGAACATAAAAATTATGATAAACATG
CTTCAGCGGCGACGTTGACACCAGCAACGGCGGCAGTAGGAGCAGCAGGA
GCAGGAGGAACAACAACTGCAACGGCAAGCATCATCACCACAACAGGACC
CGCAGCGGCAACAATGTCCTCCTCGTGGTCTGGTGAATTCCTGCTGCCGG
GTATTCAGTTACCCGTGGCCGCAGCGGGGCATAGCTGCACCGATCTCCGG
CAGACGTCGCAATTAGTTATGCCCACTGTTGCTAGCGGGGATGTGGTGGC
GGCAGTGGACGCAGAAGGCGGCGTCTTGGAATGCGGCAAGCGATGCTGGC
GACGTGAGCGAATCCGGCGCGAAGGACCAAGTCATGCGTCTGCGGCGTCG
CTGGCCCAGGTAAATCCAATCAGCACAAGCAAAGCACCAGCATCAGCACT
AGCCCAGCAACAATAGATGGAGCATCGGGAGCAGGAGCAGTGGTTACGAC
AACCGCTCACAATTCGCAAACACGACAAAACACGGCAAGGGCACACTGGT
GCTGCATGCCGCATGATGAAGAGAATGAGATGATGAATGTAGGTGCTTTA
ACTATACCGGTGATATTAGTCTGGATCGGCGGGGCGAGGCGCGGAACTTT
CGGCATACGTGGCTGATGTTCTTGTGGCAGCATCTGCTGCGGCACGGAAA
CAACCCCCCACACTCATCGAACGAAACTGATCACGAATCCAGCTTCCGAC
GGTACACACGGAACCAAGGAACGGACGTGCCTGACTCCAAATGCTGCACG
CGTCAAGTGCTCTTGCAGCTCTACGTTGTGCCGATCCCA
FMO05761.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16791-RD | 7002 | CG16791-RD | 1107..2205 | 35..1118 | 5115 | 98.5 | Plus |
| CG16791-RC | 4719 | CG16791-RC | 1107..2205 | 35..1118 | 5115 | 98.5 | Plus |
| CG16791-RB | 4551 | CG16791-RB | 1107..2205 | 35..1118 | 5115 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21342082..21343052 | 1090..131 | 4310 | 98.7 | Minus |
| 3R | 32079331 | 3R | 21348395..21348495 | 135..35 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:28 has no hits.
FMO05761.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:50 Download gff for
FMO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RB | 1097..2245 | 26..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:31 Download gff for
FMO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RA | 1080..2228 | 26..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:39 Download gff for
FMO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RB | 1097..2245 | 26..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:39 Download gff for
FMO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21342016..21343048 | 135..1147 | 97 | <- | Minus |
| 3R | 21348396..21348505 | 26..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:50 Download gff for
FMO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17167738..17168770 | 135..1147 | 97 | <- | Minus |
| arm_3R | 17174118..17174227 | 26..134 | 97 | | Minus |
