FMO05762.5prime Sequence
1209 bp (993 high quality bases) assembled on 2008-09-02
> FMO05762.5prime
TACCTTATACGAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCG
CTGCTCTACCGCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAG
AAATTACATTCATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAA
GTACTTTGTCCGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGC
GTGGCAGAGGACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCT
CGAAGATCCGGACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACA
GCATAAGCCGGCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAAC
ACGAAGCTTACCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCG
TTATGGCAACTATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGA
GCGTCATGTACCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTG
TTCCTGGATCCGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCA
GAAGGCCTTCTCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAA
GTGGATCCGATTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAG
GATCTGAGCGAGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGAC
AAAAGACAATAAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAA
AAACCGATGGATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTAT
CACCGGGTGGGTGAGAGCCAGGATAAAGACACACTGGTTGTTCGAATTTC
CGGAAGAGCCTTCGTGGCGCATCCATCCACCGTCTCGGATTGTGGAAAAT
ACCTGATTCTGGCCATTGTTAAAGATTGCCGTGACAACATTGTGTTCTAT
GCTGATCTTACGCCAGTGCGAATAACTTCCAAACTGATGTCAAGAATGTG
AAAATTCGAGGCGACTACGATTACTTACCATGAGCTCGAGATTTCTTCGT
ACAATAAGAATGCCCCATTACAAGTATGCTAGACTTCATATTACGAGACA
ATTGAAGCCTTATCAACCAATCGAGTTTGACTGTTATGCTGAATGTAACG
TCCTGTACCTGATGAGCGTTGCAGATTCTAGAGTGCACTCTGTGCGATTA
CTGTTATTC
FMO05762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5355-RA | 2404 | CG5355-RA | 34..1092 | 27..1067 | 4820 | 97.9 | Plus |
| CG2528-RE | 2342 | CG2528-RE | 205..410 | 246..451 | 205 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10412624..10413219 | 728..133 | 2980 | 100 | Minus |
| 2L | 23513712 | 2L | 10412425..10412567 | 872..729 | 655 | 98.6 | Minus |
| 2L | 23513712 | 2L | 10413325..10413430 | 132..27 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 10412246..10412361 | 987..875 | 465 | 97.4 | Minus |
| 2L | 23513712 | 2L | 21992524..21992729 | 451..246 | 205 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:38 has no hits.
FMO05762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:26 Download gff for
FMO05762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..1064 | 27..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:32 Download gff for
FMO05762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 143..1173 | 27..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:20 Download gff for
FMO05762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5355-RA | 34..1064 | 27..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:20 Download gff for
FMO05762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10412425..10412567 | 729..872 | 98 | <- | Minus |
| 2L | 10412224..10412364 | 873..1004 | 93 | <- | Minus |
| 2L | 10412624..10413219 | 133..728 | 100 | <- | Minus |
| 2L | 10413325..10413430 | 27..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:26 Download gff for
FMO05762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10412224..10412364 | 873..1004 | 93 | <- | Minus |
| arm_2L | 10412425..10412567 | 729..872 | 98 | <- | Minus |
| arm_2L | 10412624..10413219 | 133..728 | 100 | <- | Minus |
| arm_2L | 10413325..10413430 | 27..132 | 100 | | Minus |
