FMO05766.5prime Sequence
1267 bp (1060 high quality bases) assembled on 2008-09-02
> FMO05766.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTACCACAAG
CCCGAAGCTAAGACCGTCCAGGATCTGAAAGATCTGGCCCAGAAACTGCG
AATTCACTCTATCAACGCCACCCAGGCCTCCAAATCGGGCCATCCCACAT
CATGTGCCTCGATCGCTGAGATCATGTCCGTGCTGTTCTTCCAGCAGCTG
CGCCTGAACCTGAAGCACCCACGCGATCCCTCCAGCGATCGCTTCATCCT
GTCCAAAGGACACGCTGCTCCCATTCTGTATGCCGCCTGGGCTGAGGCTG
GTCTCTTCCCCATCGCGGATCTGAACAACCTGCGCAAGATCGACAGCGAT
CTGGAGGGTCACCCGACGCCTCGTCTGAACTTCATCGATGTGGGCACTGG
ATCCCTGGGACAGGGTGTCGCCGTCGGCGCTGGCATGGCCTATGTGGGCA
AGAACTTCGACAAGGCCGACTACCGCACCTACGTGGTGGTGGGTGATGGT
GAGTCCGCCGAGGGTTCCATCTGGGAGTCGCTGCACTTTGCCGGCCACTA
TAAACTGGACAACCTTTGCGTGATCTTTGATGTGAACCGCTTGGGCCAGT
CGGAGGCCACCTCCCTGCAGCATAAGCTGGATGTTTACCGTGATCGTCTG
GAGGCCTTCGGCTTTAATGCCGTCGTTGTCGATGGTCATGATGTCGAGGA
ATTGAGCAAGGCTTTCCATTGTGCTGCAATCACCAAGAACAAGCCCACCG
CCATCATTGCAAAGACGTTCAAGGGCAGGGACTTCCCCAACATCGAGGAT
TTGGACAACTGGCACGGCAAGCCACTGGGCGACAAGGCCGCCGAAGTGGT
GAAGCATCTGGAGGGACTGATTGTCAACAGAACGTCAAGCTGACCCCTAA
GCCGGTGCCCAGACTGGTGCTGCTCCCGACGTGGACATCAACAACATTAA
GTTGAGCCCCGCCACCCGCCTACAGCTGGGTGATTCCATTGCCACCCGTT
TGGCCTATGGAACAGCTCTGGCCAGATTGGCAGACACCTGGGGTGTTGTG
CCCTAGACGGAGACCCAAGACTCAACTTTCTTCGACCAGGCTGAGACTCC
GACCCGCAGCGCTAATGGAGTGGCTCCATCGCTTAACGATCTTGTGGGGA
TGGGCGTGGACGCCCTGGCCGTCCGCCAGTGGACTTGTTCACCTTTGCAC
CCTTTACGGCCTGATGATCGAGGCCATTCGAGGAGCTACTTTGGTTCACT
GGCGGTGCGTATCCGTA
FMO05766.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..1331 | 36..1148 | 5015 | 97.4 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..1589 | 36..1148 | 5015 | 97.4 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..1275 | 140..1148 | 4495 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8672597 | 139..1024 | 4230 | 99.4 | Plus |
| 3L | 28110227 | 3L | 18293677..18294199 | 587..65 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8669825..8669928 | 36..139 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:02 has no hits.
FMO05766.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:57 Download gff for
FMO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1572 | 36..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:38 Download gff for
FMO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..1300 | 36..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:34 Download gff for
FMO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1572 | 36..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:34 Download gff for
FMO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 36..139 | 100 | -> | Plus |
| 3R | 8671711..8672713 | 140..1133 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:57 Download gff for
FMO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 36..139 | 100 | -> | Plus |
| arm_3R | 4497433..4498435 | 140..1133 | 97 | | Plus |
