FMO05768.5prime Sequence
1261 bp (1063 high quality bases) assembled on 2008-09-02
> FMO05768.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAAAATACC
GACTGATAGCGTTCTTGGCAGTGCTCCTCCAGTTACACTGCCCAACTCTG
GGCCAACCGTATCCCAATTACCATGCGGATTTTGTTGGCATCGGGGACCA
TGGCGCTGACCTCAAGTGGTGGCAGACCGCGGCCTTCTATCAGATCTACC
CAAGGTCATTTAAAGACAGCAACGGCGATGGCGTGGGTGATCTGAATGGC
ATCGCGGAGCAACTTCCATACCTTAAGGAGCTGGGAATCACGGCCACTTG
GCTATCGCCCATCTTCACCTCACCCATGGCAGACTTTGGCTACGATATAG
CCAACTTCACTGAGATTGCTCCTATTTTCGGAACAATGGCGGACTTTGAA
CACCTGATGGAGGTTGCCAAAAAGCTAGACATCAAGATCATCCTGGACTT
TGTGCCAAACCATTCGAGTGATGAATGTGAGTGGTTCCGTCGCTCGGCGG
CTCGTGATCCGGAATTCAAGGACTTCTACGTATGGCATCCTGGGCGTATG
GAAAACGGCAATCGGCATCCGCCCTCCAATTGGATTAGCGTTTTCCGGGG
AAGTGCCTGGCAGTGGCACGAAGGTCGTCAGGAGTTCTACCTGCACCAGT
TCGTGAAGAAGCAACCGGATCTAAACTATCGAAACCCAAAGGTCCGGGAG
ACCATGAGTAACGTCTTGAGATTTTGGCTTGGCAAGGGAGTAGCCGGCTT
TCGTATTGATGCAGTGCCCCATGTGTTCGAAATAGCGCCGGATAATCAGA
ATCAGTACCGTGATGAGCCGCGAAACGACTGGGACAACGACCCCGAGGAC
TATGGCTATCTGCAGCACATCTACACCAAGGATCAGCCGGAGACCATTGA
CCTGTGTACTCGTGGCGAGCTGTTCTGGATGCGCACCAGAGGAGCACGGC
GGGGAGGACCGCATCTTATGGCCGAGACCTACTCACCCATAGATATCGTG
ATGCAGTTATTACGCAATGCGACGCGGAGGGCCCCTCAGCTGCCGTTCAA
CTTTCTGCTGATAAGCGAGCTGTCCAACTCGTCGAATGCCACGCCTACGA
GGAACAGTGCTCAAGTGCCTGCCGCCACATGCCAAGTCGCCACTGCCACT
GGTGTTGGTAACACGATCGCCGATGGCTTCCGCTGCAGAATCTTGAATGC
TAACTGTCTACTGCCCTGTTCCGGCAGTTCCTAAGGCAGAACTGCTGATC
ACAGTGTGTAA
FMO05768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RC | 1988 | CG30359-RC | 93..1233 | 38..1168 | 5240 | 98.2 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 93..1233 | 38..1168 | 5240 | 98.2 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 360..1290 | 248..1168 | 4190 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8463112..8463573 | 248..709 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 8463631..8464048 | 710..1122 | 1660 | 95.9 | Plus |
2R | 25286936 | 2R | 8462845..8463056 | 38..249 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 8457358..8457626 | 537..269 | 340 | 75.1 | Minus |
2R | 25286936 | 2R | 8465398..8465604 | 269..475 | 300 | 76.3 | Plus |
2R | 25286936 | 2R | 8458893..8459398 | 167..669 | 275 | 70.8 | Plus |
2R | 25286936 | 2R | 8453829..8454031 | 269..471 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8471348..8471436 | 357..269 | 235 | 84.3 | Minus |
2R | 25286936 | 2R | 8472079..8472261 | 167..349 | 225 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:08 has no hits.
FMO05768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:50 Download gff for
FMO05768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 84..1192 | 29..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:41 Download gff for
FMO05768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 64..1172 | 29..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:45 Download gff for
FMO05768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 84..1192 | 29..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:45 Download gff for
FMO05768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8462836..8463055 | 29..248 | 98 | -> | Plus |
2R | 8463113..8463573 | 249..709 | 100 | -> | Plus |
2R | 8463631..8464043 | 710..1117 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:50 Download gff for
FMO05768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4350341..4350560 | 29..248 | 98 | -> | Plus |
arm_2R | 4350618..4351078 | 249..709 | 100 | -> | Plus |
arm_2R | 4351136..4351548 | 710..1117 | 97 | == | Plus |