FMO05769.5prime Sequence
1285 bp (1074 high quality bases) assembled on 2008-09-02
> FMO05769.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCAGACAGCA
TCCACAACGCAAAGTGTAACCGCTGCACCGGCGGGTGGCAGCAGACGCAA
TGAAGTGGGCGGCGTGGGCGTCATCGGGACCACCATGTCGGCTAGATATG
GAGAAACAGAATGGGAGGCTCGGGAGTCCCAGCGGCAGAGGGAACTGCAC
GAAGCTCGAGCACGGGCGGCGCAGATGGAGAAAACCATGAAGTGGTGGTC
CGACTGCACTGCCAACTGGCGGGAGAAGTGGAGTAAGGTCCGCAACGAGC
GGAATAAGGCCAGAGAGGAGTCCAAGCAGCTGAGCCTCAAACTGGACGGC
GTCATGAAGGAGGCCCACTCGCTGAAGCGGGAGAAGAACGATCTCGAGTT
GCAGATCACGCAGCTAAAGAAGGAGATGGAGAAAGTGCACACGCTGATGA
TGAAGCACGCCGGTCAGTTCCATCGAGCCGACACCAGCGAGGATGCGGAG
GCCAACGGACGGGATGCCAACTGCTCGCCGGATATCTCCTCGGATGGCTT
AAAGAATATCAATAGCGAGGACGGCTTGGTTACCAAGCTGCCCAATGATG
TCAAGGATCTAGACATTGAGGAGTTCGCTATGAAGGGGGCTATGCCCAAA
CATCTGACCGAGTTGGACGAAGCGGCGGCTGCCGAGGAGAAGCGCCTGAT
TCAGCAATTGTCAAAGGATGACTTTGACGAAGACTACTTGCTGCAAAAGA
TATCCATGCTGCATTGCGCCTCGACGAGGCTCAGAAAACTCTTCAAGCGG
AAAGGGACGAAAAGCTGGAGCTGCACAAGAGCATTGAGAAACTGACGCTG
GAGATCCAGGACGTGCGCGGACGTCAAGAGGAGATGCGCTCGGCCAAGCA
GGAGGCAGTGCGTGAACTATTAACTCTTCAAGAACAACATCGTGCTGAGA
TGCGTATCGTGAATAACTCGCTGCAGGAGGAGATTGCTGCCCGTGAGATC
TCGAGCGCCGCCTCACGGAGCTCCCCACTGAACTGGAGCACCTTCAGGCG
GAAAAACGCCTCCGAATGGGGCAAGCGCCGAGCGACTGGAAGTCCCAAAA
TTGGGCCATGGGAGGTGAACACCAGAACTGGCCGGCAGAACCTGGCCGAG
AATTATCCTGGAACCGTCGAACCGTTAAGTGCGCACCACTGCAGCTATGA
CTGGAGCGTCGCGAATGTGCGACAGGGACTCTCCGGAAGCGCACGGGAGA
GATACTCACGGCGAGAGTGTATGAAATGATCGTAG
FMO05769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31638-RB | 2587 | CG31638-RB | 175..1249 | 36..1111 | 5160 | 99 | Plus |
| CG31638-RA | 3212 | CG31638-RA | 175..1249 | 36..1111 | 5160 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6491682..6492204 | 286..807 | 2565 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6492260..6492463 | 808..1010 | 970 | 99.5 | Plus |
| 2L | 23513712 | 2L | 6491235..6491375 | 36..176 | 705 | 100 | Plus |
| 2L | 23513712 | 2L | 6491433..6491507 | 175..249 | 375 | 100 | Plus |
| 2L | 23513712 | 2L | 6492519..6492597 | 1010..1090 | 260 | 93.8 | Plus |
| 2L | 23513712 | 2L | 6491567..6491609 | 247..289 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:43 has no hits.
FMO05769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:23 Download gff for
FMO05769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31638-RA | 168..1261 | 28..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:42 Download gff for
FMO05769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31638-RB | 107..1200 | 28..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:18 Download gff for
FMO05769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31638-RA | 168..1261 | 28..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:18 Download gff for
FMO05769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6491228..6491375 | 28..176 | 97 | -> | Plus |
| 2L | 6491435..6491505 | 177..247 | 100 | -> | Plus |
| 2L | 6491568..6491607 | 248..287 | 100 | -> | Plus |
| 2L | 6491684..6492204 | 288..807 | 99 | -> | Plus |
| 2L | 6492260..6492463 | 808..1010 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:23 Download gff for
FMO05769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6492260..6492463 | 808..1010 | 99 | -> | Plus |
| arm_2L | 6491228..6491375 | 28..176 | 97 | -> | Plus |
| arm_2L | 6491435..6491505 | 177..247 | 100 | -> | Plus |
| arm_2L | 6491568..6491607 | 248..287 | 100 | -> | Plus |
| arm_2L | 6491684..6492204 | 288..807 | 99 | -> | Plus |
