FMO05776.5prime Sequence
1203 bp (1027 high quality bases) assembled on 2008-09-02
> FMO05776.5prime
TATAGCATAATTAAACGAAGTTATCAGTCGACATGTCTAAAGCTCCTGCT
GTTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCA
TGGCAAGGTCGAGATCATCGCCAACGACCAGGGTAATCGTACCACTCCAT
CCTATGTTGCCTTCACCGATACGGAGCGTCTGATCGGAGATGCCGCCAAG
AACCAGGTGGCGATGAACCCGACCCAGACGATCTTCGACGCCAAGCGCTT
GATTGGTCGCAAGTTCGATGATGCCGCCGTGCAGTCTGACATGAAGCACT
GGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACC
TACAAGGACGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCTTCGATGGT
GCTTACCAAGATGAAGGAGACCGCCGAGGCCTATCTGGGCAAGACTGTGA
CCAACGCGGTCATCACCGTGCCGGCCTACTTCAACGACTCTCAGCGTCAG
GCGACCAAGGACGCCGGCACCATCGCCGGTCTGAACGTGCTGCGTATCAT
CAACGAGCCCACTGCCGCTGCTATCGCTTACGGTCTGGACAAGAAGGCTG
TTGGAGAGCGCAACGTGCTCATCTTCGATCTGGGCGGCGGCACCTTCGAT
GTGTCCATCCTGTCGATCGATGACGGTATCTTTGAGGTCAAGTCCACGGC
CGGAGATACGCATCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCACCC
ACTTCGTGCAGGAGTTCAAGCGCAAGCACAAGAAGGATCTGACCACCAAC
AAGCGTGCTCTGCGTCGTCTGCGCACCGCTTGCGAGCGTGCAAAGCGTAC
CCTGTCGTCCTCCACCCAGGCCAGCATTGAGATCGACTCTCTGTTCGAGG
GTACCGACTTCTACACCTCGATTACTCGTGCCCGTTTCGAGGAGTTGAAC
GCTGATCTGTCCGCAGCACCATGACCCCGTGAAGAAGGCTTCTGCGTGAC
GCCAAGCTGGACAGTCGGTCATCCACGAACATTGTGCTGGTCGGTGCTCC
ACCCGTATCCCAAGTTCCACCGGCCTGCTGCAGGTCCTGTTCCATGGGCA
AGGACGTGACAGTCGATCAAATCCCGATGAAGGCGTGTGCCTACGGGGTG
TGCGGTCAGGCCGCCTATCCTCTACGAGGCACCAAATCCAAAGAAGTGGC
TAC
FMO05776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-4-RG | 2336 | CG4264-RG | 82..1215 | 33..1165 | 5105 | 97.5 | Plus |
Hsc70-4-RB | 2339 | CG4264-RB | 85..1218 | 33..1165 | 5105 | 97.5 | Plus |
Hsc70-4-RD | 2352 | CG4264-RD | 98..1231 | 33..1165 | 5105 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15244360..15245390 | 33..1061 | 4850 | 99.3 | Plus |
3R | 32079331 | 3R | 12506038..12506913 | 45..917 | 1255 | 76.5 | Plus |
3R | 32079331 | 3R | 12509321..12510196 | 45..917 | 1255 | 76.5 | Plus |
3R | 32079331 | 3R | 24056229..24057094 | 914..52 | 1250 | 76.6 | Minus |
3R | 32079331 | 3R | 11955411..11956286 | 917..45 | 1240 | 76.4 | Minus |
3R | 32079331 | 3R | 11958792..11959667 | 45..917 | 1240 | 76.4 | Plus |
3R | 32079331 | 3R | 12466679..12467554 | 917..45 | 1240 | 76.4 | Minus |
3R | 32079331 | 3R | 12502755..12503630 | 45..917 | 1240 | 76.4 | Plus |
3L | 28110227 | 3L | 13975919..13976639 | 240..960 | 965 | 75.6 | Plus |
3R | 32079331 | 3R | 13045581..13046163 | 203..782 | 795 | 76.2 | Plus |
X | 23542271 | X | 11803808..11804160 | 733..378 | 635 | 79.2 | Minus |
3L | 28110227 | 3L | 13974589..13974773 | 51..235 | 475 | 83.8 | Plus |
3R | 32079331 | 3R | 13044985..13045131 | 63..209 | 330 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:44 has no hits.
FMO05776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:12 Download gff for
FMO05776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-4-RD | 98..1170 | 33..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:50 Download gff for
FMO05776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-4-RE | 25..1102 | 26..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:39 Download gff for
FMO05776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-4-RD | 98..1170 | 33..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:39 Download gff for
FMO05776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15244351..15245390 | 24..1061 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:12 Download gff for
FMO05776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11070073..11071112 | 24..1061 | 98 | == | Plus |