Clone FMO05776 Report

Search the DGRC for FMO05776

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:57
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptHsc70-4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05776.5prime Sequence

1203 bp (1027 high quality bases) assembled on 2008-09-02

> FMO05776.5prime
TATAGCATAATTAAACGAAGTTATCAGTCGACATGTCTAAAGCTCCTGCT
GTTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCA
TGGCAAGGTCGAGATCATCGCCAACGACCAGGGTAATCGTACCACTCCAT
CCTATGTTGCCTTCACCGATACGGAGCGTCTGATCGGAGATGCCGCCAAG
AACCAGGTGGCGATGAACCCGACCCAGACGATCTTCGACGCCAAGCGCTT
GATTGGTCGCAAGTTCGATGATGCCGCCGTGCAGTCTGACATGAAGCACT
GGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACC
TACAAGGACGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCTTCGATGGT
GCTTACCAAGATGAAGGAGACCGCCGAGGCCTATCTGGGCAAGACTGTGA
CCAACGCGGTCATCACCGTGCCGGCCTACTTCAACGACTCTCAGCGTCAG
GCGACCAAGGACGCCGGCACCATCGCCGGTCTGAACGTGCTGCGTATCAT
CAACGAGCCCACTGCCGCTGCTATCGCTTACGGTCTGGACAAGAAGGCTG
TTGGAGAGCGCAACGTGCTCATCTTCGATCTGGGCGGCGGCACCTTCGAT
GTGTCCATCCTGTCGATCGATGACGGTATCTTTGAGGTCAAGTCCACGGC
CGGAGATACGCATCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCACCC
ACTTCGTGCAGGAGTTCAAGCGCAAGCACAAGAAGGATCTGACCACCAAC
AAGCGTGCTCTGCGTCGTCTGCGCACCGCTTGCGAGCGTGCAAAGCGTAC
CCTGTCGTCCTCCACCCAGGCCAGCATTGAGATCGACTCTCTGTTCGAGG
GTACCGACTTCTACACCTCGATTACTCGTGCCCGTTTCGAGGAGTTGAAC
GCTGATCTGTCCGCAGCACCATGACCCCGTGAAGAAGGCTTCTGCGTGAC
GCCAAGCTGGACAGTCGGTCATCCACGAACATTGTGCTGGTCGGTGCTCC
ACCCGTATCCCAAGTTCCACCGGCCTGCTGCAGGTCCTGTTCCATGGGCA
AGGACGTGACAGTCGATCAAATCCCGATGAAGGCGTGTGCCTACGGGGTG
TGCGGTCAGGCCGCCTATCCTCTACGAGGCACCAAATCCAAAGAAGTGGC
TAC

FMO05776.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-4-RG 2336 CG4264-RG 82..1215 33..1165 5105 97.5 Plus
Hsc70-4-RB 2339 CG4264-RB 85..1218 33..1165 5105 97.5 Plus
Hsc70-4-RD 2352 CG4264-RD 98..1231 33..1165 5105 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15244360..15245390 33..1061 4850 99.3 Plus
3R 32079331 3R 12506038..12506913 45..917 1255 76.5 Plus
3R 32079331 3R 12509321..12510196 45..917 1255 76.5 Plus
3R 32079331 3R 24056229..24057094 914..52 1250 76.6 Minus
3R 32079331 3R 11955411..11956286 917..45 1240 76.4 Minus
3R 32079331 3R 11958792..11959667 45..917 1240 76.4 Plus
3R 32079331 3R 12466679..12467554 917..45 1240 76.4 Minus
3R 32079331 3R 12502755..12503630 45..917 1240 76.4 Plus
3L 28110227 3L 13975919..13976639 240..960 965 75.6 Plus
3R 32079331 3R 13045581..13046163 203..782 795 76.2 Plus
X 23542271 X 11803808..11804160 733..378 635 79.2 Minus
3L 28110227 3L 13974589..13974773 51..235 475 83.8 Plus
3R 32079331 3R 13044985..13045131 63..209 330 81.6 Plus
Blast to na_te.dros performed on 2014-11-28 22:16:44 has no hits.

FMO05776.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:12 Download gff for FMO05776.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-4-RD 98..1170 33..1104 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:50 Download gff for FMO05776.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-4-RE 25..1102 26..1104 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:39 Download gff for FMO05776.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-4-RD 98..1170 33..1104 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:39 Download gff for FMO05776.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15244351..15245390 24..1061 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:12 Download gff for FMO05776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11070073..11071112 24..1061 98 == Plus