FMO05778.5prime Sequence
1245 bp (1074 high quality bases) assembled on 2008-09-02
> FMO05778.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGTAACGATGAACT
CGGAGGCGGACAAAACACAAGCCACCAATGCCAGCAGCACCGCGGCGCCG
GCCAAAACGGACTGCACCAGCAGCAACAGCAGCGATCCGCTGGCGGTGGC
CATTCCGGAGCCACAATCCGCCACCGCCGTCGTTGGTGGAGGTGCAGGAG
GAGCAGCACCCGGCACAGCCACGCCATCGCCAACACCACTGGCCAATGGC
AGTAACAATGGCACTGGGTCATCGGTCTCACCGGCAGCAACAGGAACAGG
AGCAGTAGCCACAGCAGCAAGTGCTCCAGCAGCAGCAGGCACAACATCGG
CATCCCCGCCAGCAAGCAACCCAACCACTGCATCCACATCGACAGCCAGC
GTTGTTGGAGCCAAGACGGCAGCGGCCACCACCACATCCTCCTCTTCGGC
CACATCCTCGTCGACGGCGGCGGCGGGCAGCAAGCAGAGCGGCTCTAGCG
GCGGACTGCTGACCGTCAGCGGGAACCACCATCACCACCACCACGCCCAC
CCACAGCAGTCGGCGGCGGGTCAATCGGCCGCCCAGCCGCCCCAGCCGCC
CACCGCAACCGCCTTAGCGGTTCCATCGGCGTCGCACCACCAACGCGGCG
GAAAGAACGAGGATGCACCCAATATCCTAGTGTACAAAAAGATGGAGGCC
ATCATCGAGAAGATGCAGGCGGAGTCGACGGGCGTGGCGGTGCGCACGGT
GAAGGCGTTCATGAGCAAGGTGCCATCGGTGTTCACGGGTGCGGATCTGG
TCGCCTGGATTCTCAAGAACTTCGACGTGGAGGACGTGACGGAGGCCCTG
CACTTTGCCCACCTGCTCAGCTCGCATGGGTACATATTTCCCATCGATGA
TCATGCGCTGACCGTCAAAATGACGGCACCTTCTACAGATTCCAGACGCC
CTACTTTTGGGCCTCGAATTGCTGGGAGCCGAGAAAAACGGACTATGCCG
TCTACCTTTGCAGCCGCACCATGCAGATAGACGCCGTCTGGAGTTGGCCG
ACTACGAGCGAGAATCTGGGCAAGCTGCGAAGATGTTCTCCAGAAGTGGG
AGTTTAATTTCATGCAGGCCGATTCCAAGCAAGGGCCAAAACCGTTACTG
GAACGAGGTCTGAACTCCAGACCTCTCTCTGGAGTCACGCATGCGGTGCT
CAACACGGATGAATAAAAGCAACAGCGGTGTTCCCCCGTGTGACG
FMO05778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..1720 | 35..1122 | 5135 | 98.4 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..1720 | 35..1122 | 5135 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843151..16843807 | 691..35 | 3285 | 100 | Minus |
| X | 23542271 | X | 16842581..16842830 | 938..690 | 1200 | 99.6 | Minus |
| X | 23542271 | X | 16842332..16842520 | 1118..935 | 490 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:56 has no hits.
FMO05778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:18 Download gff for
FMO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..1674 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:53 Download gff for
FMO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..1674 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:46 Download gff for
FMO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 622..1741 | 28..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:46 Download gff for
FMO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16842581..16842828 | 692..938 | 99 | <- | Minus |
| X | 16843151..16843812 | 28..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:18 Download gff for
FMO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16736614..16736861 | 692..938 | 99 | <- | Minus |
| arm_X | 16737184..16737845 | 28..691 | 99 | | Minus |
