FMO05779.5prime Sequence
1255 bp (1078 high quality bases) assembled on 2008-09-02
> FMO05779.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGACTCACAAA
GGTCTACAACACGGACGACGACGACTCCGGTTACGTTGGTCGCAGAAATT
TGCCCCTGGTGGCTGGCGATAAATTAATGATGCTCATGGACCTGAACAGC
AAAGGTCTAGTGATCGACAGTCCGCTGATCCGCGGACGTGAACTGGAGGA
GTTTTCACGGAAATTCAAACTGCTCACAGAGGCCGAGCGCCGGCAATCGC
TGGAGATCGACAGTGCCAGTTTTATGGAAGTCCTCAATCAATGTGTCCAG
TGCGTTGGCTGCCGCAGACGCGTAGAGCGGTTGTTTCACCAACTAACCGA
GACGGGGCACCGAACACTTGATCCGCTGGAACTGCGACCCACTGCCACCC
TGGGCATTGTGGAGGAGAAGCTTAAGACTCCGCAGGCACTGGGAACGCTG
CTCTACCGGCACCATGAGGTTCTCAACAACCTGCTGGACAACAAACTGCG
AAACAAGACGCGCTGCGTTCTTCATTCGCTGGACGCCTTTCGTGCCAAAC
CCTTTTCGGAGACATGGCGAGAGGTGTGGTCCGCCATGAAGAGTAACTGC
CGCAACGAGTTAACCATCATCGAGACAAAGGAATTGCACGACGTACTGGA
GAACTACCTGAAGAAGCACAAGTTTTGCTCTGGCTGCCGTACAAAGATTG
AGCGCGCCTACAAAATACTCATTGGTGAAATATCGTCCAAGGAGAAGGGC
TATGCGGCCCAGTTGTACGCTCATATTCGGAAGTGCGTGCCCGACCAGCA
CATCCACGTGACCACAAACAAGATAGAGTTCCTGGACGCGCTGATCAAGC
GGGCCGAGCCCGAGGTGAACGGTAGCTACTCTAAACTGCGCGAGCGCACG
CTAAGACGCTGGAGATTGCCCAGGAAGAGGTGCTGACCTGCGTGGGCATG
ATTATGTACGACGGCTGCGTCGCATCTACGTCAGTCTGCGGAGGAGGAGC
GCGCATGCCAGGTGCTGGCCGCTGTGGGTGTTCCACGCCCTTTGCCGCAG
CTTTGAACGTTCGGTGAGCAGAAGCAGGATCAGCATCTTGAGCTACTCCT
ACCAGAGATCAGCCGTGCTGAAGGCCAGCGATCAGGCGACAAAAAGCTCA
AGAAGAAAGAGCCGAAAAGACTTGCGCCCCGCATGCCGATCCAGCACGAG
TCTGAGAGAGAGAAGTGGATGAGAACTACCCTGGGAGAGAGATTCAATGC
CCTGT
FMO05779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..1376 | 34..1121 | 5195 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5658141..5658708 | 696..129 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5657502..5657934 | 1121..695 | 1700 | 96.5 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 129..34 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:12 has no hits.
FMO05779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:16 Download gff for
FMO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1427 | 26..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:54 Download gff for
FMO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 276..1424 | 26..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:56 Download gff for
FMO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1427 | 26..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:56 Download gff for
FMO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5657448..5657932 | 697..1166 | 94 | <- | Minus |
| 3R | 5658141..5658707 | 130..696 | 100 | <- | Minus |
| 3R | 5659535..5659634 | 26..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:16 Download gff for
FMO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1485257..1485356 | 26..129 | 96 | | Minus |
| arm_3R | 1483170..1483654 | 697..1166 | 94 | <- | Minus |
| arm_3R | 1483863..1484429 | 130..696 | 100 | <- | Minus |
