FMO05782.5prime Sequence
1242 bp (1052 high quality bases) assembled on 2008-09-02
> FMO05782.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGTTCTACTGTCATCTGT
GCAAGAAGCACATGTGGGATGCCAACTCTTTCGAGAACCACATCAAGGGC
CGCACCCATCTGATGATGCGTGAGGGCATTGAGGAGAGCTATCGCCTCAA
GGCCAACATGATCCGTCAGGAGGCTAAGATCGCAGAGCAGCTCAAGTCGA
TCGAGTTTGACCGCTTGAAGCGCATGGGCAAAAGCAAGCAGCGTCAGCTG
GACTACTGCACCATGTGCGACCTGAACTTCCATGGTCACATCTCGACCCA
TCGCAAGTCGGAGGGACATTTGCAGCTGAAGAAGTTCTTGCACCCCAAGT
GCATTGAGTGCAACAAGGAGTTCGCCACTCGCATTGACTACGATACTCAT
CTGCTGTCCGCCGAGCATCTGAAGAAGGCTGCCGAGAACAACACCAAGGT
GGGTGAGCGCAAGCGCCAGACCTTGCCCATCAGCACCGAAGAAGAGGAGA
CCCGCGATTTGCGCCTGCCCCAGAAGCGCAAGAAGAAGCCGGTCAAGAAG
GAGGGCGAAGCAGCCGATGGCGAGGCTAAGAAGGAGGGTGCCGGCGATGG
CGAGGGTGCCGAAGGTGATGAAGCCGAGGGAGAAGAGGCCAAGGAGGGTG
AGGAAGCTGCTGACGAGACAAAGGAGGGCGATGAGCTAAACGAGAGCCAA
GAGGAAGAGGAAGTGGCACTGCCCGTGGACCCCGAGGACTGCATCCTTGA
CTTCAACGACGGCGATGAGATCCCCAGCGAGGTGGATACCCGCCTACCTA
AGTACAACTGGCAGCGTGCTGTCGGTCCCGGTCTGATCTCCAAGCTGGAG
TGCTATGAGTGCTCGGTGTGCAGCAAGTTCTTCGACACCGAGGTGACCGC
CGAGATTCACTCCCGTACGGCGACTCATCACCGCAACTTCTTGAAGTTTA
TCAACGAGAATCAGCGATACCAGATCGCACAGAAGCCGCGCAGCTGCCGC
CCTGAGGAGATGAGCGTAAGAAGCGCAAGTTGAGGAAGCAGAGGCTCCGC
TGCCGAGGGCGCCGCCGAGGAACCACCGAAGCGCTGAGGTGGACCTGTAC
GATCCATCGGAGCACTTGGCCATGACAAGAACTTGAATGTGATGTAAATG
TCTGAGGCAAGGCAGCTAGTACAAGAATCCAGGCTAGTCAGAAATGCCCG
CCTACCGCAAAGGAATGTGACCATAGAAAGTCTGGCGAGGCG
FMO05782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 712..1803 | 28..1111 | 5125 | 98.5 | Plus |
| Pep-RC | 2691 | CG6143-RC | 777..1868 | 28..1111 | 5125 | 98.5 | Plus |
| Pep-RB | 2792 | CG6143-RB | 878..1969 | 28..1111 | 5125 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17638926..17640017 | 1111..28 | 4880 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:34 has no hits.
FMO05782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:02 Download gff for
FMO05782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 878..1988 | 28..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:44 Download gff for
FMO05782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RC | 772..1882 | 28..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:49 Download gff for
FMO05782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 878..1988 | 28..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:49 Download gff for
FMO05782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17638926..17640017 | 28..1111 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:02 Download gff for
FMO05782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17632026..17633117 | 28..1111 | 98 | | Minus |
