FMO05783.5prime Sequence
1225 bp (1036 high quality bases) assembled on 2008-09-02
> FMO05783.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGCCTACATCAACATCG
CCGAGTGGACGCCCGACCAGGTCACCGACTGGATAAAAGGTCTGGATGAG
TCTATGAAGGGGTATTTGTACGAGTTCTCCAAGCAGGAGATCGGCGGACG
GGCGTTGCTCAACATACGGCCATACGAGCTGGAGAATCTGGGCATGCTGC
GCATTGGCCATCAGGAGATCGTGCTGGAGGCGGTGGAGAACTTAAGAAAC
TTCCATTATCACCTGAAAAACGACAATCTGCAGTTCATGGCCTTGCATGT
GGCCACGGCAGCTAAGAATCTGCATCGCGAACTGGCCAGGAATCATGCGG
AGAGCACTAAGATCGATACCCGGATACTGCACGATATTACCAGGACGATA
GCTACTCTAAAGCCATTGGTGGGCAGCCTGGAGCGAACACCGTTCCGTAA
GCAGGAGATGTACCGCGAGTATTGTGGCAATGTGCTCAAATGCGGCCTGG
AGCTGGCCACAATTGCCCACCGTGATCGTTTTGCCCTGCAGCCGGTGCCA
GCGATTCGACAGTCAGCGGAACGGCTCGAGAATCTTGCCAACTTTGTAAT
CCAGGACATATCTGATCCCATGGTACTGCAGCCAGCCTCTCTGAACCTTG
TCACCCTTAAAAAACGCGAATCCGAGTTGGGTTTCAACATAGAGTCCAGT
TATAATGGCATTCACCGTGTCACGGATATCAAGTACAACTCGCCCAGCTC
ACAATTCCGGAAAAATCGAAGATGGCGACGAGATTGTGCAGATCAACTAC
CAGACCGTTGTGGGCTGGCAGCATCGCACAGTACTGGAGCATCTGAAGGA
AGCACTTCCAGATGTGGTGCTGACGGTGAAGAAACGGCCGAAGCACACAA
AGATTGTTTCGGACAGATCTATATGCAGCCGTACAGGTTGCCCAGAAGAA
GAGGAATATGGCGCCGCTGGGCGGCACAGATGCCAAGTCTCGTGCTGCAT
TTTACCCTGGAACACGGAGCAACTGGCAACAGGAGGACAGGAAGGCGGTG
CCAGAATCCCAGTTAATCCCTAAGCAGTGAAGAGGGAGGTACTTACCAAG
GCAATCCAGGTCCTCTGCCTCGACTCTTGATCAGTGTGCAGTATATCCAC
CCAACGGATTCAAGCTAGCGCGCGGAGATTCGTTTGATATACCAGAGCCA
GAACTCTGGCTCTCAGCGAGATCCG
FMO05783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnk-RB | 5816 | CG6556-RB | 540..1709 | 32..1186 | 5100 | 97 | Plus |
| cnk-RA | 5397 | CG6556-RA | 121..1290 | 32..1186 | 5100 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17418150..17419024 | 1121..254 | 3600 | 97.4 | Minus |
| 2R | 25286936 | 2R | 17419084..17419249 | 253..88 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 17419409..17419468 | 91..32 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:51 has no hits.
FMO05783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:15 Download gff for
FMO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 116..1239 | 24..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:45 Download gff for
FMO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 127..1250 | 24..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:38 Download gff for
FMO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 116..1239 | 24..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:38 Download gff for
FMO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17418128..17419024 | 254..1142 | 97 | <- | Minus |
| 2R | 17419084..17419247 | 90..253 | 100 | <- | Minus |
| 2R | 17419411..17419473 | 24..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:15 Download gff for
FMO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13305633..13306529 | 254..1142 | 97 | <- | Minus |
| arm_2R | 13306589..13306752 | 90..253 | 100 | <- | Minus |
| arm_2R | 13306916..13306978 | 24..89 | 95 | | Minus |
