FMO05785.5prime Sequence
1255 bp (1079 high quality bases) assembled on 2008-09-02
> FMO05785.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAACAATTTGGAGCA
CTCCAAGCATTTCTATCCTGATAACTACAAATTGGATCTGTCTGAGACCA
TGAAGGCGGCTCTGTCCAAAGGACCCGGTGGTGGTGCCGGTGGCGGGGGC
GTGGCAGGCGGAGATATGCTGCCGCAGCCAAATGCTGGAATGCCAGGAGT
GGGCTATGTTACGGAAAAGCTGTACATGCTGCTGCAGCTGTATCTGCAGA
ACAAAGGCTGGAATCCCAGTGCTGAGCTGCTGCAGTGCTTCAGCGATCTC
AAGGACAATGCCATGCTGCCCAGCGCCGCCTATCTGCAAGTCCTGGCCAA
CCGCTTAACCCTGGACTCCCAGGGACGGCTAATACTGCGCGACAATGGAA
AGATTGTCTTGCCCTTTGAGCATTTTGCCAATGCGGTCATGCTAAAGCAC
ATGTCAGGTCCGCACGGCCTGCACCTTAGTGTCGATGCCACGGTGAGGGC
AGTCATTGAGTCGTACACCATCGGTCGGGATCAGTTCGGCATGGAGAAAG
AGTTCATCATCGAGGTGGTGCAGTCCTGCCCAAGTCCCGCATGTCGCTAC
TATAAAAACCACATGGGAATTTCGCCCATGCCGTTCATGGAGCAGCAGTA
TCCGGGCGTAAACACTCCCGAGTTCCTGCAGCGCTTGGCGCATCTGCCGC
CTGGGGGAGCAGCCGGATCTGGGCCAGGAGGCTCCGCAGCCGGATCCACC
TCCAGCGTGGCAAGCAGCTCGAGTTCGGCGAACGTGGAAATCGATCTGTC
CAAGTCGACGGGCGCGAAAGTGCCCCAGGTGCCGGTGCCGCCGCAGTTGC
AGCACCTGACCAAGCAGCAGCAGAGCACTCTCCAGACGCAGCTCTCCCAG
ATCAGTGCTGCCGCCGCTCATCATCAACACAACAACAGCAGCAACACAGC
AACAGCAGCAGCAGCAGCACACACAGCAAGCAGCAGCCAAGCACCAGCAG
CAATTGACTGCTGCCCTCATCCAACAGCAAAACGTGTCCTCGCCCAGCAA
AATTAGAGAAGCTTACCACCACCTCAGTCCGCCTGGAAAAGCAGCGAGTT
TCCGCCCACTGGATCCAAACACTTTGATCCCATTGGCCGTGCGGCTGCGA
CCGCCCAACTCTCAAATCAGCTGTGCATCCAGGCATGGTGCCGTGGGCAT
CCAGAACTCGGGCTCCATACTCTGCTGCAGAGAAAGTCATCGGCCCGAGA
GCTCT
FMO05785.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5466-RA | 2907 | CG5466-RA | 209..1351 | 34..1168 | 5275 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20618564..20619389 | 339..1155 | 3475 | 97.2 | Plus |
| 3R | 32079331 | 3R | 20618214..20618507 | 45..338 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:37 has no hits.
FMO05785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:04 Download gff for
FMO05785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5466-RA | 200..1341 | 26..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:03 Download gff for
FMO05785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5466-RA | 173..1314 | 26..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:51 Download gff for
FMO05785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5466-RA | 200..1341 | 26..1158 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:51 Download gff for
FMO05785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20618214..20618507 | 45..338 | 100 | -> | Plus |
| 3R | 20618564..20619391 | 339..1158 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:04 Download gff for
FMO05785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16443936..16444229 | 45..338 | 100 | -> | Plus |
| arm_3R | 16444286..16445113 | 339..1158 | 97 | | Plus |
