FMO05786.5prime Sequence
1239 bp (1051 high quality bases) assembled on 2008-09-02
> FMO05786.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTGGAGTTA
CTGCCGACGCCTCGCAGGCGAATCAGCTGTCCTCGGTCCGGAACCCGATG
ATCAAGTACATGCTGAAAACACGGGAGAATCATGCTCGGGAACAGGATCG
CGACTACTCGCATGTCTTCCGCCGGAAGACGCGGTTCGAGATGTTTCGAT
TGTCCGCCATCGCCATGGCCATTGAATTTGCCTATGCGGCGGAGACGAGT
TTCGTCTCTCCGATTCTCCTACAGATCGGTGTGGATCACAAACACATGTC
CATGACCTGGGGACTGTCGCCACTGATTGGATTCTTTATGTCCCCGCTGC
TGGGAAGTATTAGCGATCGCTGCAAGCTTCGTTGGGGTCGCCGACGTCCA
ATTATCTCGATTCTATCATTTGGCATAATGTGCGGTTTGATTCTGGTGCC
ATATGGCAAGGATCTGGGTCTGCTGCTTGGCGATGCCGGATATACTTATG
CAGAGTCAGCCTTGAATTTCACATCTTCGTCGGGGGGATCTGTGGCTGCT
TTGGTTTCGGGTGAAGCGACGACAGGACCTTCTGCATCCGACTATAAGTT
CGCCGTGATCCTTACGATTTTGGGCATGGTCCTATTGGATTTCGATGCGG
ATACCTGCCAGACACCGGCTCGCACTTATTTACTGGATATGTGTGTGCCA
GAGGAGCAGCCGAAAGCCATGACCATGTTTGCGCTCTTCGCGGGATTCGG
CGGCACGATTGGATATGCCATTGGAGGAGTGGATTGGGAGACAACGCATA
TTGGCAGCTTCATGGGTGGCAATATACCCACTGTATTCACCCTGGTCACA
TCATATTCGCGGTGTGCTATCTTATCACGGTGACCACATTCCGTGAAATT
CCATTGCCCTTGATCGAGCAGATGAGCTGCTGAGACCGCTGTCCGAACAG
GCCATCAAGAGAGTTGAAAAGAGACATACCATTACTATATCCAGAGACCA
CACAGCTGAGCTTCGATGCCAGTGATGATCCCAGCGATTGGAGGCCTGCC
AGCAGCTATCAGATTGCTAATTCACCCGCTGTGGAAAGCAGGCAATCCAG
ATTTGGAGACATCGAATACATGCTCCGTTTCCTTAGGCTATCCAAAGACC
TCTACTATGCATTGATGCCGGCTGCCTCCAATCCTCTCGGGAGCCAGTCC
AATGCCGTATCACGACATGTGGGGAGGAGATTTCACGGG
FMO05786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 2378 | CG4484-RD | 328..1421 | 38..1110 | 4875 | 97.6 | Plus |
| Slc45-1-RC | 2161 | CG4484-RC | 111..1204 | 38..1110 | 4875 | 97.6 | Plus |
| Slc45-1-RB | 3007 | CG4484-RB | 957..2050 | 38..1110 | 4875 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9204437..9205500 | 1085..38 | 4540 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:56 has no hits.
FMO05786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:20 Download gff for
FMO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 952..2036 | 33..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:04 Download gff for
FMO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-RA | 1..1080 | 38..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:41 Download gff for
FMO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 952..2036 | 33..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:41 Download gff for
FMO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9204421..9205505 | 33..1098 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:20 Download gff for
FMO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9197521..9198605 | 33..1098 | 97 | | Minus |
