FMO05787.5prime Sequence
1242 bp (1043 high quality bases) assembled on 2008-09-02
> FMO05787.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGAATCCAAATC
TTGCTCCTGACACTCTTGCTGGGCCTCGTCTGCGCCCAGGCCGTGGATGC
GGAGGCCAAGAGCAGCCAAGCCAAGCCAGCGGAAGACAGCAAGAGCTCCG
CCTCCACGCCACTGGAATCGGAGGCGACCAAAGACAAGCGACAAGTGAGC
TCCAAGGAGACGTCTCTGTACCCCAACCACCGCAGCTCGGCGGCATCGTC
AAGCGCCAACGATGATCCCGAGGATGGTCAGGAAACCATCTACGGCTCCA
AGCCGAATCAGTTCATCATTCGCCCCATTGCACCGCACCAGCATCAGCAG
CACGAATCGCACCAGGAGCCGCAGTTGAGGAACTTTGCGGCGGCCAATTC
TCGACCCCATGCCGCCCAACTTCTCGAGCAGAGTCAGGAGGTGCAGCACT
ACGTGTATCTGCAAGATATAATGCGCCATCATCAGCCCAAGGCCCTGCTG
GCCGCAGGTCAAGGCAAGGGTGCGGCCAGTGCGCCCAAGAAGTCATCCAC
TCCGGTGGCCGAGGAGGAGCAGGAGCAGGAACAGGAGGCGGAACAGCGAT
ACGCGGTGTCCATTCAGCCGCAGCCGCAGCAACAGCTCCAGCTCCAGCAA
CCACGTCCACGTCAGTACCAGGGTCCCTATCAACTGCCATTGCCGCTGCC
TGCTCCACAGCATCGATCGGTGAATCCCCAGCAGCAGCAGCAGCAACATC
AGCAGCCCTACCAAGTGATTCCCGAAGAGCAGTTTCTTAAGATCCTGGAG
GAGGAGCTGCAGGCTAGAGCCTATCATGAGCAACTTCGTCAGCAGCAGCA
GCATCAACAGCAGCAGCAGCAGCAGCAGCAACACCAACAGCAGCAGCAGC
AACAGCACCACAAGCACTGCCCATCCACAGCACGGCTGCCACTCACAAAG
TGTTGCAGCAAGCGGATCCCTCGCTAGGATTAGCGGCTATCCCGAAGGGT
TTGTGGCCGAGCAGGAGCTGGTGACACCACCTTATCGCATCCCGGGGGGG
TCCCAATATCTGCCTGCCAAAGGCGCAGACAATTCAGAGATGATGACACA
GCACAACGGAGCGGGGGGGCGTCCCAAACGATCCGATCCCGGCAGCACTC
TTCATGAACTGCACCCGATGGCCATCACACCCGAAGCTCAGACCTGCCAC
ACTCCAGGCACTTCTGGAGTAATGAATTGTTGGGCCAATAAA
FMO05787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34382-RE | 2864 | CG34382-RE | 329..1395 | 36..1096 | 4955 | 98 | Plus |
| CG34382-RC | 3091 | CG34382-RC | 556..1622 | 36..1096 | 4955 | 98 | Plus |
| CG34382-RF | 2858 | CG34382-RF | 329..1389 | 36..1096 | 4855 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9880205..9880576 | 72..443 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 9882300..9882616 | 439..755 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 9882676..9882959 | 754..1035 | 1230 | 97.2 | Plus |
| 3L | 28110227 | 3L | 9879540..9879577 | 36..73 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7034 | 615..920 | 289 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2659 | 615..916 | 263 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..7079 | 615..959 | 207 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7079 | 562..906 | 201 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2653 | 615..932 | 186 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1160 | 562..657 | 164 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3031 | 627..907 | 154 | 54.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1154 | 615..684 | 116 | 62.9 | Plus |
FMO05787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:55 Download gff for
FMO05787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34382-RC | 550..1596 | 28..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:06 Download gff for
FMO05787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34382-RC | 550..1596 | 28..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:37 Download gff for
FMO05787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34382-RC | 550..1596 | 28..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:37 Download gff for
FMO05787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9879534..9879576 | 28..72 | 91 | -> | Plus |
| 3L | 9880206..9880573 | 73..440 | 100 | -> | Plus |
| 3L | 9882302..9882616 | 441..755 | 100 | -> | Plus |
| 3L | 9882678..9882953 | 756..1029 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:55 Download gff for
FMO05787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9872634..9872676 | 28..72 | 91 | -> | Plus |
| arm_3L | 9875778..9876053 | 756..1029 | 97 | == | Plus |
| arm_3L | 9875402..9875716 | 441..755 | 100 | -> | Plus |
| arm_3L | 9873306..9873673 | 73..440 | 100 | -> | Plus |
