FMO05788.5prime Sequence
1253 bp (1046 high quality bases) assembled on 2008-09-02
> FMO05788.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAATTTAAAT
TTTCAACAACCCCCGAGAAGTATAGCGAACGCGGCGTTAGCTGGCCGGAC
AACAGGCGGATTCGGTGGTAGCTCCCTGGCTGGCCATGTGACGCCCACGT
CGGGCATGTTTCAAACCGACTTCGCCAACTCCTATCCAGGAACGGCGAAC
TACGGACAGGCGCCGCAGCAGCAGCAACAACAGCAGCAGCAGCCCCAACT
GTCGCCGAACCGGAATGCCCAGCTGTCGGTCGGCGGACCCGCCATCTCGA
GCGGCAACCGCAACGCCAACCTCTTCGGCCAGCGTCAGTTTGTGGAGCGG
CGAGCCATGCAAGGATTGGGCAGTGGCCCCATGTCGAACATGGGCAACTT
CATGCAGACGGGTCGCGGCGGCTACGGAACGGGCGGAGGCGGTGGCGGTC
CTTTGAATAACTTCCACGTGTTCGGCGGCGGCGGTGGTAGCGACACCTCC
ACGCCTGCCCTGCTCGATCCCACGGAGTTCCCCTCGCTGACGAATGCGCG
CGGCCAGAACGACCAGACACTGCCCCAATCGAATCCGCTCCAGCCGCCGG
GCAGCAAACCCTATGGTAATTTCTTTACCTCTTTTGGCATGGTGAAGCAA
CCGACGTCAGAGCAATCGGAGTTCACGATGTCTAACGAGGACTTCCCTGC
GTTACCGGGCACCCAAAACTCGGACGGCACAACGAACGCGGTGGGGAGCG
TCGCCGGAACAGGAGGCTCCGGAGGTGCGTCCACAGAGAATCACTTGGAC
GGCACGGAAAAGCCGATGAATTCGATAGTGGTCAGCGGATCAGCGAGCGG
CAGCAGCGGTTCCAACGTCGGCGTTGTAGCGGCAATGGTCTCGGTGCCGT
TGGCAGTGGTATAGGGGGCTTGCCAGTAGCGGCGGCGAGAGCTGGTAGCT
CAGGAGGCGGAGGAGTCGGCGGCAATGCAGCCAGCGGCGTTGTCGGCGGG
TCCCATGTAGACTGGTGGGCAGTACAGCGGCATTGGCGGCGTCACAACGT
ACCCAACAACCATGCCATGATGGGCGTAAGCGCGCCTGGGGAGTGAAGCG
GCTCGTCTGGAGCGGAACGGGCGGCAGACATCTGACGATATTCCGCAACG
ATACTTGTAAGACGGCGCCACCTGCTCAATGGAAGTCCAACATACCGCCA
TGTACACCAGTTCGCATGTTGGCTGTCGTAACTTCATTTCGGGCGTCGTC
ACC
FMO05788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-RA | 2902 | CG2161-RA | 1047..2187 | 36..1160 | 5165 | 97.8 | Plus |
| Rga-RC | 2514 | CG2161-RC | 745..1867 | 36..1160 | 4885 | 96.2 | Plus |
| Rga-RB | 2816 | CG2161-RB | 1047..2169 | 36..1160 | 4885 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5608507..5609019 | 1135..634 | 1905 | 95.5 | Minus |
| 3R | 32079331 | 3R | 5609632..5609882 | 633..383 | 1255 | 100 | Minus |
| 3R | 32079331 | 3R | 5610215..5610430 | 383..168 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 5610488..5610620 | 168..36 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:51 has no hits.
FMO05788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:26 Download gff for
FMO05788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..2187 | 36..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:08 Download gff for
FMO05788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1043..2183 | 36..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:22 Download gff for
FMO05788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..2187 | 36..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:22 Download gff for
FMO05788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5608533..5609019 | 634..1110 | 96 | <- | Minus |
| 3R | 5609632..5609881 | 384..633 | 100 | <- | Minus |
| 3R | 5610215..5610429 | 169..383 | 100 | <- | Minus |
| 3R | 5610488..5610620 | 36..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:26 Download gff for
FMO05788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1434255..1434741 | 634..1110 | 96 | <- | Minus |
| arm_3R | 1435354..1435603 | 384..633 | 100 | <- | Minus |
| arm_3R | 1435937..1436151 | 169..383 | 100 | <- | Minus |
| arm_3R | 1436210..1436342 | 36..168 | 100 | | Minus |
