FMO05789.5prime Sequence
1223 bp (1072 high quality bases) assembled on 2008-09-02
> FMO05789.5prime
ATAGCATACATTTTACGAAGTTATCAGTCGACATGGGTTCCAACGGCGAA
GAATTATTGAATTTCGCAATGAACTCAGACAGCGTAAATACCATAAATTC
AACAGCGGACGTCGCAGAAATTGTCTTAGACACTAATTTAGAGTTCAACA
AGACGATTCCTTTTCATCTGCCTCAGGAGTCGGACGTGGAAATGGTCTCT
GTCAGATCAGCTGCCGAACCTGATCCTAACAAATCAGATTCCAAAGCAAG
TAATAAATCAGATTCCAAATTAGATGGTAAATCGATATTAGAGTCAGGAA
CCAAACCTCAGGCGGCCCCGGGGGAGGTTTTCGCTAGGAAGGCATGCCTC
AAGAGGACCAACGAATATCCTGCTCCGCTGAATCATACTCTCAAGAAACT
GAACTGGAAGTTTAACCTGCGTATATTGATCTCAAATCTGTACATGAAGA
GCGAGGATCGTCTTCCGGGAGCTTGTGTTTCCAGGTGTCTTTACAATACT
AGTCTGTGCACGCAAAGACATCGGTGCTCCGCGCTTCCGGATGGCCCAAA
CTTTGCGGCCGTTCAGGCGCTACGAACCACGTTGCACGGCCAGCACTACG
ATACATTCCTGGACATTCTGGAGATGATGGTGTTGCAGGGTGTCTACCCA
GGCGAAGGAGTCTTTGACAGACTAATAGATATGGCCATGATCCTAATTGC
CAAAGAGATAAGCGTAAAGGAGCTTGGCGACATCTACAACAAACTTATAC
GCACCTTTTTTCTTTTGGTCGACGCCTTTCCCCCGTGCTGGACAGCCCTG
CGTCCTTACTACTTGAGTTTTCTGGGCGTCTCGCATCCCCCCTTGCGAGA
AACACGTTCAACCAATTCTACCCAGAAGTTGCAGTTTTACATCGATCTTT
TGAGGAAATCTAACGCATTGCAGCGATGAAGAGATACGTGAAAACACCAA
ATTCTATGAAAGTTTGTGTTTACTTCTCGGAGAGGAGGATGCGGATATGT
CCAGGAAACGGTCTTTCTGCGACATGTACAGCAGTATGACTGGCAGGTGG
GAAGCTTTGTCTGGACGACTTCAGAAGAATGTCGCCCGCAGTCGCTGCAC
GATTCGCGAGTCCTGAATGCTCCATGGTACTGGAATAAGTTCCCTCCTGC
TGATCTAACGGTTGAGCACTCGGATCGGAACTTTCGAAGCTCAGTCCATG
CTCTGCGATTGTAAGTGCCCGAG
FMO05789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RB | 2630 | CG5664-RB | 195..1366 | 33..1179 | 5165 | 97.4 | Plus |
| CG5664-RA | 2621 | CG5664-RA | 195..1366 | 33..1179 | 5165 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21440513..21441169 | 689..33 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 21440044..21440455 | 1093..689 | 1665 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:40 has no hits.
FMO05789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:06 Download gff for
FMO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1277 | 33..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:11 Download gff for
FMO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..1237 | 33..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:53 Download gff for
FMO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1277 | 33..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:53 Download gff for
FMO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21440044..21440454 | 690..1093 | 97 | <- | Minus |
| 3L | 21440513..21441169 | 33..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:06 Download gff for
FMO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21433144..21433554 | 690..1093 | 97 | <- | Minus |
| arm_3L | 21433613..21434269 | 33..689 | 100 | | Minus |
