FMO05793.5prime Sequence
1212 bp (991 high quality bases) assembled on 2008-09-02
> FMO05793.5prime
AGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGGCG
CTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCGGG
ACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACCAT
TGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACGGC
GTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGGAA
AAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAAGC
CCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTATTC
AATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATATGT
TGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAAGA
ATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAGTC
AAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGACT
CTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAAAT
TGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGGAG
CAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGATGG
CGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGCCT
GGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATCGC
TGGGGCTTCGGCACTGCGTGTATGCTGGGTGACTTCTACAATTGTGCCGA
TCGCTCCATCCCGGTGTTCTGCAAGCCTCACAAGTGGGAAAATGCCTTCA
CCTGGATCGCACAGCTGGGTCAGCGATTCGATGTCTTCTTTGTCCGATTT
TTATGACCTCCAAGAGTCATTTAAAGAGATTATCACCCACTGTTAGCTTT
ATGGCAATGTGCTGATCCATGTTGGACCACCCAAGTTTGGTACCATACTG
CCCATTTTCAGGACGTTCTAAGGGACACTTGGTCGCTGGCTGAAGTTCAT
GCGAGGGATTTACCGCCGTATACCTGGGAATTATCGAAATGGATCCGTCA
AGGAAATGTTTGGGTATGCGCAAGGAAGCATCCATGAAATCACCATATCG
CTTGTGCCTGGG
FMO05793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11714-RD | 3514 | CG11714-RD | 1917..3071 | 15..1163 | 5020 | 96.6 | Plus |
| Fuca-RC | 3513 | CG6128-RC | 1917..3071 | 15..1163 | 5020 | 96.6 | Plus |
| Fuca-RB | 1675 | CG6128-RB | 79..1233 | 15..1163 | 5020 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11519571..11520034 | 964..502 | 1940 | 97.9 | Minus |
| 3L | 28110227 | 3L | 11520509..11520746 | 252..15 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 11520294..11520435 | 394..253 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 11520106..11520214 | 501..393 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 11519372..11519496 | 1099..975 | 315 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:43 has no hits.
FMO05793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:44 Download gff for
FMO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RB | 74..1165 | 8..1099 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:13 Download gff for
FMO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11714-RA | 1912..3003 | 8..1099 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:31 Download gff for
FMO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RB | 74..1165 | 8..1099 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:31 Download gff for
FMO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11519372..11519494 | 977..1099 | 91 | <- | Minus |
| 3L | 11519558..11520034 | 502..976 | 97 | <- | Minus |
| 3L | 11520106..11520212 | 395..501 | 100 | <- | Minus |
| 3L | 11520294..11520435 | 253..394 | 100 | <- | Minus |
| 3L | 11520509..11520751 | 8..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:44 Download gff for
FMO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11512472..11512594 | 977..1099 | 91 | <- | Minus |
| arm_3L | 11512658..11513134 | 502..976 | 97 | <- | Minus |
| arm_3L | 11513206..11513312 | 395..501 | 100 | <- | Minus |
| arm_3L | 11513394..11513535 | 253..394 | 100 | <- | Minus |
| arm_3L | 11513609..11513851 | 8..252 | 98 | | Minus |
