FMO05794.5prime Sequence
1174 bp (960 high quality bases) assembled on 2008-09-02
> FMO05794.5prime
CATTATACGAAGTTATCAGTCGACATGAACAAACTACGGGCCCTGCTGCC
CGGCCAACATTCTGGCTCCAATGGAGCATCCCGGCACTCCGTAACTCTGG
AGCCGGAGATCGGATTCCAGATCACCATTGACAATCCAAAAAACAACGAT
CAGAGCAAGGGTTCCACGGCGGTGCCCGAACTGAATGTCCATCTCATCGC
CGCGCGACATTTGCCCTCTCTTTTCGGCTTCAAGATCGTCCAGGGGTATC
TTATAAAGGTGAAGCTTTTTCCCGGTTCGAAACGCTTGGACAGCAGCATT
CAGACGAATACATGGCCAAAGTTCAATGAAAATTTCAAGTTTCCCCTGGT
GCCGGATATCAAATCCTCTATGAAACATGTGGCTCGACGTCCCGCAAATG
GACAGGTAAGCAGCTCGGATCAGGAGCCGGAACAACTCTTTTCCGGGCAA
TTTTTGGTCTTTACGGTCTACGCGCTACTGGAACTTCCGGCAACGAACTT
CAATCGCTTTAACAAGACATACCGCTCGCTAAAAGATAGAAGCACCAGCT
TTGTGCAGCGTTTCGTGGATCCAACTGCGAGTGCTCCAAGTGAGGCAAAG
ACTGAGGCCGGCGGAAAGCCAAGTGACCAGGGAAAGGGCAGGAAGAAGTC
GTCGGAGAGCTCCGCTCGGGATGCGATGCCACCGCTGACCATCAGTGAAT
CGCGCAGAAATATAGGTTCCGTCACCTGTTACCTGGAATCGAAGCTCTTC
CAGCGCAACAGCCGCACGGGGTGCTATCCACGGAAGAGCTGTGGCTGCCT
ATCAAAGATATCACCACGACGGTGGCCAAGTCGTCACCCCAGCAACAACA
TTTGGTTAACTCCACATGGTGTGGTCGAACTGGCTCTCGAGTGCGAGATC
TCCTGAATGTGAGACACCTGTGGATATTTCACTGCCCCTGCACGCCACGA
CACGCCCACTACCAGATCCTCCATCTCCACTTGCACCCATGCGACACATG
GCAACGGATGACGGCGATGACGAATGGCCATAGCATGCCGCAACGCGACT
CGCGATCTGTTCCGGTACACCAACGGATGCCTGCTCAATAGGTCAAGAGG
CTGAGCCACGCGAGTCCGGTGTTATTGAGACGCTGAACGACTTATAGCCT
GGAATCCCATCTGCCCGCGTGTCA
FMO05794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-RC | 2310 | CG10660-RC | 702..1706 | 24..1012 | 4605 | 98.1 | Plus |
| CG10660-RA | 1709 | CG10660-RA | 101..1105 | 24..1012 | 4605 | 98.1 | Plus |
| CG10660-RD | 2289 | CG10660-RD | 702..1685 | 24..1012 | 4280 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12489739..12489975 | 260..24 | 1185 | 100 | Minus |
| 3L | 28110227 | 3L | 12488553..12488775 | 717..495 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 12488828..12488960 | 495..363 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 12488085..12488221 | 850..714 | 590 | 98.6 | Minus |
| 3L | 28110227 | 3L | 12489012..12489117 | 362..257 | 530 | 100 | Minus |
| 3L | 28110227 | 3L | 12487293..12487447 | 995..852 | 285 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:53 has no hits.
FMO05794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:18 Download gff for
FMO05794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 101..1117 | 24..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:36:59 Download gff for
FMO05794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 114..1130 | 24..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:40 Download gff for
FMO05794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 101..1117 | 24..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:40 Download gff for
FMO05794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12488083..12488219 | 716..851 | 97 | <- | Minus |
| 3L | 12488555..12488774 | 496..715 | 100 | <- | Minus |
| 3L | 12488828..12488960 | 363..495 | 100 | <- | Minus |
| 3L | 12489012..12489115 | 259..362 | 100 | <- | Minus |
| 3L | 12489741..12489975 | 24..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:18 Download gff for
FMO05794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12481655..12481874 | 496..715 | 100 | <- | Minus |
| arm_3L | 12481928..12482060 | 363..495 | 100 | <- | Minus |
| arm_3L | 12482112..12482215 | 259..362 | 100 | <- | Minus |
| arm_3L | 12481183..12481319 | 716..851 | 97 | <- | Minus |
| arm_3L | 12482841..12483075 | 24..258 | 100 | | Minus |
