FMO05803.5prime Sequence
1235 bp (1039 high quality bases) assembled on 2008-09-02
> FMO05803.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGCCATTTCCGTCTC
TTCAGGAATGTGAGCAAATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAA
AAAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCT
GCAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCC
CGAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACG
CTGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCC
CACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGC
AAGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCAC
ACACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAA
AAAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTC
TGGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACG
CTCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAA
CAGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGG
TGGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTC
AAAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCG
ACCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCA
ATGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGT
CCGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGAGACGAAGGCGTAAAACCAGCGG
ACTACACGCGAGCTTATCAAAGAGAAGCTGACTGAGATGCTGACTGCGAA
TAGCCACCACTATGCTGAAGTTCCCTACTGCCGTGGGCAAAGATGAAATG
TTGCTGCTTGTCAGCTACACTGCCGCATCTGCATGCTTCGATGCAGTCCT
ACTGCATGATGACGTAAGCCCGTTGACTGCCTATGGCCAAAGCGGCCTTT
AGAACCTGCTAATGACTCAGAGGTTGGCTCGCTCCCTTCTCCTAGAGAGG
AGAGATGTGTAGATATACCTCCGTCATTTTCTAGC
FMO05803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RK | 2632 | CG8068-RK | 535..1652 | 30..1121 | 4890 | 97.2 | Plus |
| Su(var)2-10-RG | 2632 | CG8068-RG | 535..1652 | 30..1121 | 4890 | 97.2 | Plus |
| Su(var)2-10-RF | 2548 | CG8068-RF | 535..1652 | 30..1121 | 4890 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117152..9117852 | 30..730 | 3490 | 99.9 | Plus |
| 2R | 25286936 | 2R | 9117917..9118151 | 731..962 | 1025 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:06 has no hits.
FMO05803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:55 Download gff for
FMO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RF | 530..1638 | 25..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:21 Download gff for
FMO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RG | 561..1669 | 25..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:08 Download gff for
FMO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RF | 530..1638 | 25..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:08 Download gff for
FMO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9117147..9117852 | 25..730 | 99 | -> | Plus |
| 2R | 9117917..9118157 | 731..966 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:55 Download gff for
FMO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5004652..5005357 | 25..730 | 99 | -> | Plus |
| arm_2R | 5005422..5005662 | 731..966 | 97 | -> | Plus |
