FMO05805.5prime Sequence
1210 bp (1049 high quality bases) assembled on 2008-09-02
> FMO05805.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGACGAAATAAAGC
TCGCCAAGGTGGAAAATGTGCGGATGATAGATCGCTACAATACCAAAAAT
CCCACGGTTGGCACACTCTATCTAACGGCCACCCATCTGATATTCGTGGA
GCCCGACAGCAACAAGGAGACCTGGATCCTGCACATGCACGTGGCCAGCA
TTGAGAAGCTTCCCTTGAGCACGACAGGATCTCCGCTACTCATCCGCTGC
AAGACCTTCCTCTCCGTAACTTTCGTCATTCCCAAGGACTCCGAATGCCA
CGATGTCTACACTTCGCTGCTGAAACTCTTCCAGCCGGTGTCCATCAACA
AATTGTACTGCTTCAACTACCAGCCGAACAAGGATGATTTCCCCAAGAAC
GCTGGCTGGGATTACTTTAAACTGGAGGCGGAGTTCAAGCACATGCTGGT
GCCCAACGAGGCCTGGACGCTGTGCTCCATGAACGAGAAGTACGAGCTGT
GCGACACCTATCCGCGTCAGATTTACGTGCCCAAGGAGGCCACCACGCTG
ATGCTCATCAGCAGCTCGCGATTCCGCTCCAAGGGGCGGCTGCCAGTGCT
CACCTATCTGCACAACAACAAGGCTTCCATCTGCCGCTGCAGTCAGCCCC
TGTCCGGATTCAGTGCCCGCTGTCTGGAGGATGAGCAGATGCTGGAGGCC
ATACGCAAGACGAATTCCAACACGGACTACATGTATGTGGTGGACACGCG
ACCGCGGATTAATGCCATGGGCAAACAGAGCCGCCGGCAAGGGATACGAG
AACGAGGCCTTCTACGAGAACATCAAATTCCACTTCCTCGGCATTGAGAA
CATCCACGTCCAGCGTGCCAGTCTGCAAAGGTGCTTGAGGCCTGCGAACA
GAAGTCGCCCACGATGAGCGCCTTCATAAATGCCCTGGAGTCATCCGGGC
TGGCCTGAAGCACATTCGCTCCATATTGACACGTCGAGCTTCATCGCCAA
CGCGTGACAGGCGTCTCGGTGGTGGTCCACTGCTCCGACGCTGGAACGCA
CACCAGGTCTGTCACTGGCGCAGCTGATGCTGAACCTACTACGACATTCA
GGCTCCAGGGCTAATCGAAAGACTGCTGCATCGGACAAAGTCAGCGAGGC
CTGCGTCAATCGAACGAAGCGCCGAGGTTCCCGATTCTCACCAGTCTGTG
GAACTGTAAC
FMO05805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3530-RB | 2810 | CG3530-RB | 229..1288 | 35..1086 | 4940 | 98.4 | Plus |
CG3530-RA | 3063 | CG3530-RA | 503..1541 | 56..1086 | 4835 | 98.4 | Plus |
CG3530-RC | 3193 | CG3530-RC | 752..1671 | 175..1086 | 4240 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23391389..23391674 | 623..338 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 23390895..23391125 | 988..757 | 920 | 97.9 | Minus |
2R | 25286936 | 2R | 23391741..23391904 | 338..175 | 805 | 99.4 | Minus |
2R | 25286936 | 2R | 23391192..23391328 | 757..621 | 685 | 100 | Minus |
2R | 25286936 | 2R | 23393364..23393482 | 175..57 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:42 has no hits.
FMO05805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:54 Download gff for
FMO05805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3530-RB | 229..1296 | 35..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:23 Download gff for
FMO05805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3530-RB | 228..1295 | 35..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:48 Download gff for
FMO05805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3530-RB | 229..1296 | 35..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:48 Download gff for
FMO05805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23391390..23391673 | 339..622 | 100 | <- | Minus |
2R | 23391741..23391903 | 176..338 | 99 | <- | Minus |
2R | 23393364..23393480 | 59..175 | 100 | <- | Minus |
2R | 23396429..23396452 | 35..58 | 100 | | Minus |
2R | 23390895..23391124 | 758..988 | 97 | <- | Minus |
2R | 23391192..23391326 | 623..757 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:54 Download gff for
FMO05805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19278418..19278647 | 758..988 | 97 | <- | Minus |
arm_2R | 19278715..19278849 | 623..757 | 100 | <- | Minus |
arm_2R | 19278913..19279196 | 339..622 | 100 | <- | Minus |
arm_2R | 19279264..19279426 | 176..338 | 99 | <- | Minus |
arm_2R | 19280887..19281003 | 59..175 | 100 | <- | Minus |
arm_2R | 19283952..19283975 | 35..58 | 100 | | Minus |