Clone FMO05805 Report

Search the DGRC for FMO05805

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:58
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3530-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05805.5prime Sequence

1210 bp (1049 high quality bases) assembled on 2008-09-02

> FMO05805.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGACGAAATAAAGC
TCGCCAAGGTGGAAAATGTGCGGATGATAGATCGCTACAATACCAAAAAT
CCCACGGTTGGCACACTCTATCTAACGGCCACCCATCTGATATTCGTGGA
GCCCGACAGCAACAAGGAGACCTGGATCCTGCACATGCACGTGGCCAGCA
TTGAGAAGCTTCCCTTGAGCACGACAGGATCTCCGCTACTCATCCGCTGC
AAGACCTTCCTCTCCGTAACTTTCGTCATTCCCAAGGACTCCGAATGCCA
CGATGTCTACACTTCGCTGCTGAAACTCTTCCAGCCGGTGTCCATCAACA
AATTGTACTGCTTCAACTACCAGCCGAACAAGGATGATTTCCCCAAGAAC
GCTGGCTGGGATTACTTTAAACTGGAGGCGGAGTTCAAGCACATGCTGGT
GCCCAACGAGGCCTGGACGCTGTGCTCCATGAACGAGAAGTACGAGCTGT
GCGACACCTATCCGCGTCAGATTTACGTGCCCAAGGAGGCCACCACGCTG
ATGCTCATCAGCAGCTCGCGATTCCGCTCCAAGGGGCGGCTGCCAGTGCT
CACCTATCTGCACAACAACAAGGCTTCCATCTGCCGCTGCAGTCAGCCCC
TGTCCGGATTCAGTGCCCGCTGTCTGGAGGATGAGCAGATGCTGGAGGCC
ATACGCAAGACGAATTCCAACACGGACTACATGTATGTGGTGGACACGCG
ACCGCGGATTAATGCCATGGGCAAACAGAGCCGCCGGCAAGGGATACGAG
AACGAGGCCTTCTACGAGAACATCAAATTCCACTTCCTCGGCATTGAGAA
CATCCACGTCCAGCGTGCCAGTCTGCAAAGGTGCTTGAGGCCTGCGAACA
GAAGTCGCCCACGATGAGCGCCTTCATAAATGCCCTGGAGTCATCCGGGC
TGGCCTGAAGCACATTCGCTCCATATTGACACGTCGAGCTTCATCGCCAA
CGCGTGACAGGCGTCTCGGTGGTGGTCCACTGCTCCGACGCTGGAACGCA
CACCAGGTCTGTCACTGGCGCAGCTGATGCTGAACCTACTACGACATTCA
GGCTCCAGGGCTAATCGAAAGACTGCTGCATCGGACAAAGTCAGCGAGGC
CTGCGTCAATCGAACGAAGCGCCGAGGTTCCCGATTCTCACCAGTCTGTG
GAACTGTAAC

FMO05805.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3530-RB 2810 CG3530-RB 229..1288 35..1086 4940 98.4 Plus
CG3530-RA 3063 CG3530-RA 503..1541 56..1086 4835 98.4 Plus
CG3530-RC 3193 CG3530-RC 752..1671 175..1086 4240 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23391389..23391674 623..338 1430 100 Minus
2R 25286936 2R 23390895..23391125 988..757 920 97.9 Minus
2R 25286936 2R 23391741..23391904 338..175 805 99.4 Minus
2R 25286936 2R 23391192..23391328 757..621 685 100 Minus
2R 25286936 2R 23393364..23393482 175..57 595 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:05:42 has no hits.

FMO05805.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:54 Download gff for FMO05805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 229..1296 35..1095 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:23 Download gff for FMO05805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 228..1295 35..1095 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:48 Download gff for FMO05805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 229..1296 35..1095 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:48 Download gff for FMO05805.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23391390..23391673 339..622 100 <- Minus
2R 23391741..23391903 176..338 99 <- Minus
2R 23393364..23393480 59..175 100 <- Minus
2R 23396429..23396452 35..58 100   Minus
2R 23390895..23391124 758..988 97 <- Minus
2R 23391192..23391326 623..757 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:54 Download gff for FMO05805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19278418..19278647 758..988 97 <- Minus
arm_2R 19278715..19278849 623..757 100 <- Minus
arm_2R 19278913..19279196 339..622 100 <- Minus
arm_2R 19279264..19279426 176..338 99 <- Minus
arm_2R 19280887..19281003 59..175 100 <- Minus
arm_2R 19283952..19283975 35..58 100   Minus