FMO05808.5prime Sequence
1252 bp (1063 high quality bases) assembled on 2008-09-02
> FMO05808.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGAGTTCATAGCT
GAGATGCAGGAGCGCCTGCTGCCGGAATACGAGCAGATGAAGAACTACAG
CGTATTCACAGCGGATCAGGTCAGAGAAATCGTTAGCAGGCGGGAACGCT
TGTTCCTTAAGATCAACAAGAGCCACCAGAGCATCACCGACTACCTGGAC
TTCATACTGTACGAGAAGCACATGCACATGACCATCGTGGACAAGGAAAA
GAAGATGCACGTTAAACTCACCGGTCTAAAGGCCTCCATAGCCACGCGGA
TCATGCGCCTGTACAGAGAGGCCTTGGCTAAGTTTAACCACGACAGACGG
CTGTGGAGCAACTGGATCAAGTTCAGCAGGAAGTCAAATCCTGTCGAGGT
GGCGGGCATATACGAGAAGATGCTGCTGTACCATGGCGACTCGCCGGATC
TTTGGGTGGACGCCGCCTTATGGCTGTACGAGTTCAATCGGCTCAACATC
GATCGAGTCAAGGACATCCTGCTGCGTGGCTTGCAGAGACATCCGGATTC
CGAGGCACTTAACAAGTGCTTCTTTGACATTATGCTGAAAGAGGCTGCCC
TGGCCAGCAACGAACGCAATTTAGCCGAGAATACGCTCTCGGAACAGGAC
ATCAAATTGGAACGCGTGGAGGCGGTCTACCGCAACAGCATGGCCAATAT
TACCCAATTGGACTACTTTGTTAAGCTTCTAGAAAGCTGTGAGGATCATC
AGGAGCTGACGGGCAAGCTGCAGCGAATGATAATCGATGATATGCAAGAG
AAGTTCCCCCGGGAGCCGGGCCTGTGGGATTTGCTTGCCCAGCGAGAGTT
GCGCGGCTTTCATCTGGGCGACCTGGAGGAGGAGGACTTGGATACCAGTG
ACGAAGAGCCGGCCAGCAAGAAATCTCGTTCCGTAAATGGGCGCTCTCTC
AAGCGACGCATTCAACTCTGCGTTACTGTATACAATTCGGCGGTGGAGAG
CTGCAAACGACAGAAATGTGAATATGTATTTGGATGCCATGCTGCACTCA
ATAGCGAATGGAAAGAACGAACGTATACTAAAGCAACAGTGCTAGGCGAT
GCTTGCAAGCGGCCATCGCTCTCCAGTTGATGGGCGGAAACACATATTGC
CACATAGAAAGATGCTCTTGTCACTCCTCCGTGAAGAAGCACTGTCACAT
ATCTACGGAGCCTGAAACGATTCATGGTGTGATGAGCAAGACCTCTTCTC
TG
FMO05808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..1251 | 33..1168 | 5290 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079765..9080435 | 1092..424 | 3070 | 98.5 | Minus |
| X | 23542271 | X | 9080495..9080801 | 428..122 | 1535 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 124..33 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:37 has no hits.
FMO05808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:56 Download gff for
FMO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..1262 | 26..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:27 Download gff for
FMO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 89..1247 | 26..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:05 Download gff for
FMO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..1262 | 26..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:05 Download gff for
FMO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9079675..9080430 | 429..1181 | 96 | <- | Minus |
| X | 9080495..9080798 | 125..428 | 100 | <- | Minus |
| X | 9080856..9080954 | 26..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:56 Download gff for
FMO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8973708..8974463 | 429..1181 | 96 | <- | Minus |
| arm_X | 8974528..8974831 | 125..428 | 100 | <- | Minus |
| arm_X | 8974889..8974987 | 26..124 | 96 | | Minus |
