FMO05809.5prime Sequence
1132 bp (912 high quality bases) assembled on 2008-09-02
> FMO05809.5prime
TTATACGAAGTTATCAGTCGACATGCCTATGAGTATGTTGGTTCTGAGAT
TGATAGTTCTGGTGGTGGCCCTGCTGCCTGTTCTCTTGGAAGGAGCGCGT
ATCCTCGGCGTGTTTCCCATACCAAGCCACTCGCATTACTATCACGCCCT
ACCTTATCTAAAGAAATTGGCATCTTTGGGCCATGAGATAACTTCTGTAA
GCCCATTTCCATTGAAAGAACCTGTGGCTAATATACATGATATTCCAGTT
CCGGAATTATTTGACAATATAGAGGAAATTGTTGGAAATCTAACAAACCG
GAAGGGCACATGGAATGAATTTGAATACATCAACCAGTATACCCTTGGTC
TTGTCGAAAAAGTGCTTGAAAATGATGGAGTGCGTCGAGAGATTCTGCAA
CCAGAAAGTCTTCAGTTTGATCTGATCATTGTCGATCTTTGGCGGCTTGA
TGCTCTATACGGCTTGGCGGCCTATTTTGATGCCCCCATCATTGGAATTG
CATCTTATGGAACCGACTGGAAGATTGATGAACTAGTGGGCAATGTATCA
CCTTTAGCATACCTGCAGTCTCCGTCTTTCAACTGGTTTGATCTCGACAC
CTATGGAGGACGTCTGGGTCACTTTGTGGATCAGTCCATGGCTTGGATTA
ACTGGCATTGGCGGCACGAGGAAAGGCATGAGGCGGTCTACAGAAAAGTA
CTTCCCAAAAATTGCCGATAAACGTTCGCTGTCCGAGATCACCATAAATT
TTCGCCTTGATTTTGGTTACCAAACTTTTACGATGGCACCACCACGTCCG
TATGTTCCAATATTATTGAAGTCGGTGGTATGCATGTCGATCAACAACCT
AAAGCTTTACCCCAGACCTGGAGGACTTATCCAGGGGCTGGTGAACATGG
AGTATTTACTTTTCGTCGGCACCCAATGTAAAAAGTACAAATTCTGCTAG
GATCGCCAGAAAATATGATTGACACCTTTGCCACCCTGCCACACGCATCT
TGGGGAAATTCGATGCTGATGAATGTCAAATGTCCCCTCAATGTTCAAAT
AGCCCGTGGTTTCCGCAGCAGACATCCTTGCTCACTCAAAGCTAAGCTGT
TATTATCTCATGGGAGGCCTACCAGAGCACAG
FMO05809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-RA | 1739 | CG6653-RA | 19..1138 | 23..1132 | 4735 | 96.2 | Plus |
| Ugt86Dg-RB | 1584 | CG17200-RB | 608..986 | 642..1013 | 440 | 77.4 | Plus |
| CG31002-RA | 1663 | CG31002-RA | 468..585 | 461..578 | 305 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11166825..11167645 | 1084..275 | 3005 | 95.3 | Minus |
| 3R | 32079331 | 3R | 11167711..11167963 | 275..23 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 31394660..31394777 | 578..461 | 305 | 83.9 | Minus |
| 3R | 32079331 | 3R | 11165162..11165253 | 878..789 | 225 | 88 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:53 has no hits.
FMO05809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:50 Download gff for
FMO05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 10..1102 | 14..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:28 Download gff for
FMO05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 6..1098 | 14..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:36 Download gff for
FMO05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 10..1102 | 14..1095 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:36 Download gff for
FMO05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11166814..11167644 | 276..1095 | 95 | <- | Minus |
| 3R | 11167711..11167972 | 14..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:50 Download gff for
FMO05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6992536..6993366 | 276..1095 | 95 | <- | Minus |
| arm_3R | 6993433..6993694 | 14..275 | 98 | | Minus |
