FMO05810.5prime Sequence
1214 bp (1042 high quality bases) assembled on 2008-09-02
> FMO05810.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCTGTGCGGC
AATGTGATGACCAACTCCAAGTACGAGATGTTCCGGCTGAAATGCCTCTA
CTGCAGCATAGAGAGCGAGCTGAAGGATTGGGAGCTGTTCATCGTCCATG
TGAAATCGGCGCACTACTGCGAAGACGAGGACGTTAGGATTAATGAAATC
AAAGAGGATACCGAGGAGCTATACAGCGTCGTTGACGCGGCGGACCCAGC
CATCGCCTATGGGCCGGATGAGTTCTTCGAGGTGATCGAAAACAGCAATG
GGGTCGATCAATGGATGGAAGCTGATAGCAAGGATATCCAGTACGAGGAA
GACGCCACCGCTTGGTCTGCAGCTACAAACAATTCCTGGGAGTTCGGTCC
AGGCGGCAGCTCTTTGGAACTTCCAGCCGGAAAGGAAGTCACACAAATGG
ACGAGTCTTCCCAAAATCACATACCCCTAAACACAGACGATGATGATGTT
GATTGTAGTGACTTCTTTATGTCTGAGGATGACTTGGCACCTCCTAGAAA
ACCTGGACGTCCGCCCAGGCGAACAAGACCAGGACAGGTTTTCAAGTTCA
AAGTTTCGTTTATTCGGAGCAATCCCCGTGTGCTGCATTTGATCCAAGCG
TACAAAGAGCATCCCTGCCTGTGGAACCCTTCCGATGAACACTACCAGGA
CGAGCCTGCACGAAGCATGGCCTACGAGGCGATAATGGAACGCATGGACC
GCAAGGCCAATGTTCTCTTCACCGTGGAAGAACTGAAGAAAACGCTCGAG
CAACTGCACGTGCAGTACACGCTGGCTTTGGAGACAAAACAAAGGGGAAA
GCTTGTTGGACTTGCAGCGCGTTTATTTTGCCCAGTGCGAGTTCCTCAGT
GTGGCGCCTGTTGTACCGCCAAGGGAGTACGAGGAGGACAACGACTGACT
GCATTAAGCTTAATTTTAAGGAGGAACCTGATACCACTCATCATAGAGAC
CTATGCCACTATCCGTGCTGTATATCAGCGTGCAGACTTTGGCTCAATAG
AGATACGTGCAATGCCTCAAGATGGCAAGGAATTCCAGCCAGTGGTAAGG
CACGAACGACGTTTACTTGCGTCACAGCTGCCCGTGGCTTTACGATGCAT
TCTGCCTATCCAGGAACTATCAAGTGCACAGGCAGAGTTCATTATCTCGC
AATAGGTGTAGCAT
FMO05810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-RB | 2368 | CG1603-RB | 126..1268 | 35..1148 | 4915 | 96.9 | Plus |
| CG1603-RA | 2130 | CG1603-RA | 126..1268 | 35..1148 | 4915 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7515234..7515584 | 946..595 | 1650 | 98.6 | Minus |
| 2R | 25286936 | 2R | 7515967..7516265 | 333..35 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 7515643..7515908 | 596..331 | 1330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:57 has no hits.
FMO05810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:52 Download gff for
FMO05810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 126..1280 | 35..1157 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:15 Download gff for
FMO05810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 106..1260 | 35..1157 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:05 Download gff for
FMO05810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 126..1280 | 35..1157 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:05 Download gff for
FMO05810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7515220..7515582 | 597..958 | 98 | <- | Minus |
| 2R | 7515643..7515906 | 333..596 | 100 | <- | Minus |
| 2R | 7515968..7516273 | 22..332 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:52 Download gff for
FMO05810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3402725..3403087 | 597..958 | 98 | <- | Minus |
| arm_2R | 3403148..3403411 | 333..596 | 100 | <- | Minus |
| arm_2R | 3403473..3403778 | 22..332 | 97 | <- | Minus |
