FMO05811.5prime Sequence
1223 bp (1015 high quality bases) assembled on 2008-09-02
> FMO05811.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTACGTTCACCT
TGATCTTGGGACTATTGTGCAGCTTGGGATACTCAAGTGGATACAATTAC
CTGATGGTTCTGAATTCCGCCGGTCGTTCCCACTTTAATGTGGGACACGC
TTTGGCCAAGGGATTGGTCAAGGCTGGGCATACAATCACCGTAGTGTCCG
TCTTTCCTCAGAAAAAACCCATTCCTGGTTATACTGATGTAAGTGTGCCA
AATGTGATCGAAGTCATGGGAGGAGACATTGGAGCCTTGTGGGCATCTAT
CCAAAAGACATATACTCAGAATCTCATCGATCATTATCAAATGGGATTTC
GCATCACCAGAGGCCTTTTCGAGGACTCCAATTTCCAGGATTTTCTGAAG
AGCAACCAAAGCTTTGATGCGATCATATGTGAGACTTTCTACAATGATGC
CCACTATGGCTTGGCAGAGCATTTTAATGCTCCACTGATTGGATTGGCCA
CCGGTGGAGGTCTGACATTTATCACAGATATGGTTGGTTCCCCCGCTCCA
GCTTCGTTCGTGCCCCACATAATGCTACCCTTTAACGATCACATGTCGCT
GTACGAACGCCTTTTGAACGTGGCTTTTCTTGGCTATGAAAGAGTTCTAC
TGGACTACTATTTCTTACCGACTCAGGAGAAGTTATACAAGGAGTTCTTT
CCGGGCAACAAGAGGTGTTTCTATAAGATGCGCCGAAATGCCTCCTTGGT
GCTCATCAATCAACATGTTTCACTAAGTTTTCCGCGACCGCACTCACCCA
ACATGATTGAAGTGGGTGGGCATGCATATCGACGGAAAGTGGAATCCACT
GCCCGAGAAGATCGAGAGATTCATCAATGAGTCAGAACATGGAAGCCATT
TACTTTTCCATGGGATCGAATCTCAGACCAGGACTTACCCCCATCAAAGG
TTCAGAGATCCTGAAAGCATTAAGTGGGGCTCAAACAGCGTTCTCTTCTG
GAAATTTGGAGCTGGATAACCTGGCCCAACAAACGGAGATGTCTACATTT
CCGACTGGATTCCACAGACGGACTATGGCCCATCCCAGATCATGGCATTT
GTGACCCCCGCCGCATGCTAGCCAACAGAGATCCATTATCATGCTAACCG
GATCGGTGGGCGACTTAGATACGTTTCACATGCTATGCGAGCAAACGGCT
ATAGGCATTATGCGTGCGTGCAC
FMO05811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86Di-RB | 2556 | CG6658-RB | 53..1171 | 34..1147 | 5035 | 97.6 | Plus |
| Ugt86Di-RA | 1675 | CG6658-RA | 53..1171 | 34..1147 | 5035 | 97.6 | Plus |
| Ugt86Da-RA | 1994 | CG18578-RA | 871..953 | 747..830 | 200 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11152454..11153031 | 1107..532 | 2185 | 96.1 | Minus |
| 3R | 32079331 | 3R | 11153232..11153495 | 534..271 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 11153558..11153797 | 273..34 | 1200 | 100 | Minus |
| 3R | 32079331 | 3R | 11158621..11158690 | 747..816 | 185 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:19 has no hits.
FMO05811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:20 Download gff for
FMO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 43..1188 | 23..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:16 Download gff for
FMO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 1..1135 | 35..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:00 Download gff for
FMO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 43..1188 | 23..1161 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:00 Download gff for
FMO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11152394..11153030 | 533..1161 | 95 | <- | Minus |
| 3R | 11153234..11153493 | 273..532 | 100 | <- | Minus |
| 3R | 11153559..11153812 | 19..272 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:20 Download gff for
FMO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6978116..6978752 | 533..1161 | 95 | <- | Minus |
| arm_3R | 6978956..6979215 | 273..532 | 100 | <- | Minus |
| arm_3R | 6979281..6979534 | 19..272 | 97 | <- | Minus |
